Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3379 |
Symbol | |
ID | 8254498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4017646 |
End bp | 4018503 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644937031 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003093635 |
Protein GI | 255533263 |
COG category | [S] Function unknown |
COG ID | [COG4275] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTGGA TTACCAGAGA AAGACCAAAA ATAGACCGCA TTGCATGCCC CTGGCTAATC AAAAATTTTA TTGATGAAGA TGCTCATTTC TTTTACGTTC CGTTTGATCA GGTAATTGAA AAAGCTGCAG CATTGAATGC TATTCCCTTT GATGTTCCCG GTGTTGAATT TACACATCAA AAAGATCAAT GTACTTTTGA TGTACTGATT AAAAAGTACA AAATAAATGA TCCGGCAATA GCTATAATGG CTCCAATTGT ACGAGGTGCA GACACTGACC AGCATCACTT ATCCGGCCAG TGTGCCGGGT TATGGGCAAT TGCTGCCGGC ATGGCTTACA ACATCAAAGA TGATGTAGAG TTACTACAGG CTGGAACAGT TATTTACGAT GCCTTATATA CCTGGGCCAG ACACCTACAA AATGTAAAAC ATACAGAGAG TCCGGTTGAA CAAATATTAG TTGATGTTTA CCAAAAGTTC CTCAAAAAAG GAAGTACAGG TAAAATACCT GCCTGGGCAA CGGAGTTAAA AACCATCATT CAAGATCAGA TTGATACTAA CCTTGCCCTA AGCCTTACAG ATATCTCTAA TGAACTAAAT GTCAACCCAG CCTACGTGTC AAGAGAATTC TCTAAATATT TTGATAATCT TTCCTTTGGC GAGTACATTC GAAAACTACG GATAAATAAA GCAAAAACCT ATATGGAAAC CAGTGCATAC AGTTTATCAG AAATAGCCTA TCTGACAGGC TTTTCAGACC AAAGCCATTT CGCACGTATT TTTAAGTTGG AAACTGGAAA AACACCTTCT GTTTACAAAA AGAATATTTC AAAAGGTAAA ATACGTCCTA ATAGTTAA
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Protein sequence | MNWITRERPK IDRIACPWLI KNFIDEDAHF FYVPFDQVIE KAAALNAIPF DVPGVEFTHQ KDQCTFDVLI KKYKINDPAI AIMAPIVRGA DTDQHHLSGQ CAGLWAIAAG MAYNIKDDVE LLQAGTVIYD ALYTWARHLQ NVKHTESPVE QILVDVYQKF LKKGSTGKIP AWATELKTII QDQIDTNLAL SLTDISNELN VNPAYVSREF SKYFDNLSFG EYIRKLRINK AKTYMETSAY SLSEIAYLTG FSDQSHFARI FKLETGKTPS VYKKNISKGK IRPNS
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