Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3342 |
Symbol | |
ID | 8254461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3962238 |
End bp | 3964148 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936994 |
Product | DEAD-like helicase |
Protein accession | YP_003093598 |
Protein GI | 255533226 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
TIGRFAM ID | [TIGR00376] DNA helicase, putative |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.182611 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTACT TTAAGAAACT GCTTGATCTG CTTAAAACGG AGCGTGAAGA GGACTTACAA GCATATATCA AACAGAAGGA AACCCTTTCT GTTGCAGAAC GCAGAGCACT TGGGTTAACC TGGTATCCTA TTGCTATCCG AGGTTCGGAA ATGAGCAGGG GTGACTATTT AACTGTTGAG GTTGAACGGA CTACGCACCA TGATTTGCAA CATCAGCTTC GGTTTGGCAT GCCAGCGGTA CTGTTTTCTA ATCACGATCC TAAAAATGAT AAGGTTGAGG GGCTGATTGC TTATCAGGGA GGAAGTCGTT TAAAGATCAC TTTGTGTACG GATGAACTGC CAGATTGGGC AAGGAACGGT AAATTAGGCA TTGATGTACT GTTTGATGAT CACAGTTATG ATGAAATGCA GGCAGCTGTT AAACGTGCTT CAGTACAGAA TGAGCAGGCT GACAATCACC ATTTAATAAA GATATTGACG GGGATAGATA AGCCTTCGTT TGCAGAAGAT GTTGTTCATT ATCCAGTCGC TAAATTAAAT AAAGTGCAGC AACTTGCTGT GTACCATATT GTTGCTGCAC AGCAACTCGC TATTGTACAT GGTCCGCCGG GAACAGGTAA GACCACTACA CTTGTGCAGG CTGTTAAGAC AATGATTAAA CAGCATGGAA GGCAGATTTT GGTAGTTGCA CCGAGTAATA CAGCGGTAGA TTTATTAAGT GAAAAGTTAG CTGACGAGGG ATTGAATGTT TTACGGATTG GTAATCCGGT AAGGGTATCA GAAAAATTGT TCTCTTTAAC TTTGGATAGT AAAATGTCAG CTCATGCCAG CATAAAAGAG GTTAAGGATT TGAAAAAGCA GGCTGCGGAG TACAAAAAGA TGGCCCATAA ATACAAAAGA AATTTTGGGA GGGCAGAAAA GGAACAGCGT AAGGCACTTT TTGACGAGGC GCATAAGCTG ATGAAAGCTG TAGCCGGTGC CGAACAATAT ATAATAGAAG ATCTGATAGG GAAAGCGCAG GTAGTTACAG CAACTTTAGT AGGCGCAAAT CATTATACTA TTAAAGATAG GAAATTTGAT ACCGTAGTAA TTGATGAAGC CGGACAGGCA TTGGAACCTG CATGCTGGAT ACCAATATTG AAGGCGCAAA AGGTGATTCT GGCAGGCGAC CATTGTCAAT TGCCGCCCAC CATTAAGTCT AATGACGCTG CGAAAGCAGG TTTAAGCACC ACTTTGCTTG AAAAATGTAT TGCTTTGCAT CCAAATGCAG TTGTTTTGCT GGAAGAACAG TACAGGATGC ATACGCAGAT TATGGCCTAT TCTTCGAAGG TCTTTTACGA AGGAAAATTA AAGGCGCATG CGGCTGTTGC CGGGCATTTG CTATTTCCGG GAGATACTGC ATTAAACTTT ATTGATACTG CCGGCTGTGG ATTTGAAGAA CAAAGGGAAG GAACAAGTAT TTATAATTCT GAAGAAGCTG TATTTTTACT GAAACACTTA ACACAGTTGG TGCTGAAGCT GGCTGAGGTG TATGTTGCTG AAAATTTTCC TTCAATAGGA GTGATTTCGC CCTATAAACA ACAAATCTAT ATATTAAAGG ATCTGTTGTT GAACCATCCC GTTTTGCAGC TGTATATTGA AAAAATTTCA GTCAATACAA TAGACAGCTT TCAAGGCCAG GAGCGGGACA TTGTCTACAT CGGGATGACC AGAAGTAACA ATGAGGGAGT GATTGGCTTT TTATCGGATA TCCGCAGGAT GAATGTAGCT ATGACCAGGG CCCGTAAAAA GCTGGTGGTT ATAGGAGACA GTGCAACTTT ATCCAGATTG CCTTTTTATT CGGATTTTAT TGCTTATGCA GAAAGCATTG ATGCTTACCG GAGTGCATGG GAATTTGCTG ATGCAGACTA A
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Protein sequence | MPYFKKLLDL LKTEREEDLQ AYIKQKETLS VAERRALGLT WYPIAIRGSE MSRGDYLTVE VERTTHHDLQ HQLRFGMPAV LFSNHDPKND KVEGLIAYQG GSRLKITLCT DELPDWARNG KLGIDVLFDD HSYDEMQAAV KRASVQNEQA DNHHLIKILT GIDKPSFAED VVHYPVAKLN KVQQLAVYHI VAAQQLAIVH GPPGTGKTTT LVQAVKTMIK QHGRQILVVA PSNTAVDLLS EKLADEGLNV LRIGNPVRVS EKLFSLTLDS KMSAHASIKE VKDLKKQAAE YKKMAHKYKR NFGRAEKEQR KALFDEAHKL MKAVAGAEQY IIEDLIGKAQ VVTATLVGAN HYTIKDRKFD TVVIDEAGQA LEPACWIPIL KAQKVILAGD HCQLPPTIKS NDAAKAGLST TLLEKCIALH PNAVVLLEEQ YRMHTQIMAY SSKVFYEGKL KAHAAVAGHL LFPGDTALNF IDTAGCGFEE QREGTSIYNS EEAVFLLKHL TQLVLKLAEV YVAENFPSIG VISPYKQQIY ILKDLLLNHP VLQLYIEKIS VNTIDSFQGQ ERDIVYIGMT RSNNEGVIGF LSDIRRMNVA MTRARKKLVV IGDSATLSRL PFYSDFIAYA ESIDAYRSAW EFADAD
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