| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3249 |
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| Symbol | |
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| ID | 8254368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 3852808 |
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| End bp | 3854295 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644936902 |
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| Product | glycyl-tRNA synthetase |
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| Protein accession | YP_003093506 |
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| Protein GI | 255533134 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0423] Glycyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00389] glycyl-tRNA synthetase, dimeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.281053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00448945 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAAAGA ATACTAACGA CGAGCAATTT AAAAATGTAA TATCACACGC TAAGGAATAT
GGTTTTGTAT TTCAAAGCAG CGAAATATAT GACGGACTAA GTGCTGTATA CGATTATGGA
CAGCTTGGTG CCGAATTAAA AAACAACCTG AAAACCTACT GGTGGAAAGC CATGGTGCAG
CTGCACGAAA ATATTGTAGG CATCGACTCT GCCATATTTA TGCACCCTAA AGTATGGAAA
GCCAGTGGCC ACGTAGATGG TTTTAACGAT CCGATGATCG ACAATAAAGA TTCTAAAAAA
CGTTACCGTG CCGATCAGTT ACTAGAAGAT AAAATAGCCC GTTACGAAAA AGACGGCAAG
ACAGATAAAG CTGCGAAACT GCAGGCTGAA ATGGACGATG CCTTGAAGGC GGAAGACTTG
CAGCAACTTA AAACCCTGAT TGAACAGCAC GAGATTGCCT GTCCTGTTAG TGGTACAAAA
AACTGGACAG AAGTGCGGCA GTTTAACCTG ATGTTCAGCA CCCAGTTTGG TGCCATGGCA
GAGGGTTCTG AAGAAGTATA CCTGCGTCCG GAAACAGCAC AGGGTATTTT TGTGAACTTC
CTGAATGTAC AAAAATCTGG ACGCATGAAA ATTCCTTTCG GAATTGCACA GATTGGAAAA
GCTTTTAGAA ATGAAGTGAT TGCCAGACAG TTCATCATGC GTATGCGCGA GTTTGAACAG
ATGGAGATGC AGTTCTTTGT GCGTCCGGGT GAAGACAAAA AATGGTTTGC CTATTGGAAA
GAGGCCCGCC TGAAATGGCA CCTGGCATTG GGCACACCTG CCGAAAAATA CCGTTACCAC
GACCATGTGA AACTGGCACA TTATGCCAAT GCCGCTACTG ATATTGAGTT TGAATTTCCT
TTTGGCTTTA AGGAAGTAGA AGGCATCCAT AGCCGCACAG ATTTCGACCT TTCGCAGCAT
CAGGAATATT CGGGCAAAAA AATGCAGTAC TTCGATAATG ACCTGGATGA GACTGGTAAG
CCTTATGGTA ATTACGTGCC TTACGTAATA GAAACTTCTA TCGGCTTAGA CCGTATGTTC
CTGCTGACCC TGATCAATGC TTTTGAAGAA CAGGACCTGA GTGAAGGTGA TAAACAAGAC
AGCAGAACCC TGCTGCGTTT ACATCCCTGC CTGGCTCCTT ATAAAGTGGC AATTTTCCCG
TTAACCAAGA AAGACGGGCT GCCTGAAAAA GCAAGGGCGA TCATGGATAA CCTAAAACTT
GATTTCAATT GCATTTATGA AGAAAAAGAC GCTATTGGCA AACGTTATCG CCGTCAGGAT
GCCATTGGCA CGCCTTTCTG TGTAACGGTA GACCATCAGA CACTGGAAGA CGATACGGTA
ACCATCCGTC ACCGCGATAC CATGGAACAG CAGCGCATTG AAATTAAACA CCTGGATGAG
CTGATTGCAA GTAAAACCAG CTGGAAGACC TTGTTTTGTA AAGATTAA
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| Protein sequence | MAKNTNDEQF KNVISHAKEY GFVFQSSEIY DGLSAVYDYG QLGAELKNNL KTYWWKAMVQ
LHENIVGIDS AIFMHPKVWK ASGHVDGFND PMIDNKDSKK RYRADQLLED KIARYEKDGK
TDKAAKLQAE MDDALKAEDL QQLKTLIEQH EIACPVSGTK NWTEVRQFNL MFSTQFGAMA
EGSEEVYLRP ETAQGIFVNF LNVQKSGRMK IPFGIAQIGK AFRNEVIARQ FIMRMREFEQ
MEMQFFVRPG EDKKWFAYWK EARLKWHLAL GTPAEKYRYH DHVKLAHYAN AATDIEFEFP
FGFKEVEGIH SRTDFDLSQH QEYSGKKMQY FDNDLDETGK PYGNYVPYVI ETSIGLDRMF
LLTLINAFEE QDLSEGDKQD SRTLLRLHPC LAPYKVAIFP LTKKDGLPEK ARAIMDNLKL
DFNCIYEEKD AIGKRYRRQD AIGTPFCVTV DHQTLEDDTV TIRHRDTMEQ QRIEIKHLDE
LIASKTSWKT LFCKD
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