Gene Phep_3176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3176 
Symbol 
ID8254295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3780867 
End bp3782201 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content42% 
IMG OID644936829 
Productmembrane-associated zinc metalloprotease 
Protein accessionYP_003093433 
Protein GI255533061 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID[TIGR00054] RIP metalloprotease RseP 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.836726 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGAT TGATTATGGC GGCCCAGTTA CTTCTGGGAT TATCAATATT GGTAATTTTA 
CATGAGTTGG GACATTTTTT GGCGGCACGT GCCTTTGGGA TTAAAGTAGA GAAATTCTAC
CTGTTCTTTG ATGCATGGGG TGTTAAGCTG TTTAGCTTTA AAAAGGGCGA TTGTGAATAT
GGCATTGGCT GGCTGCCATT GGGTGGCTAT GTGAAGATCG CAGGGATGAT AGACGAATCT
ATGGATACCG AGCAGATGCA ACAGCCGGCA CAACCCTGGG AGTTTAGATC AAAACCTGCC
TGGCAGCGCC TCATTGTAAT GCTTGGTGGT GTATTTGTAA ATATAGTGGT TGGTATTTTT
ATTTTCTGGA TGCTGACCTT TAAATATGGC GAAACTTATA TTGCCAATAG TTCTGTTGTG
AGCGGGATAA ACCCTGGCAG TATAGGTAAA GAGATCGGTC TGCAAAAAGG AGATCGGGTA
ATTGCTGTAA ATGGCAATAA AGTAATTCGT TTTGAAGAGC TGATCAGTTC AAAAGTTTTA
CTGGGCAATA CCAACCTTAC GGTAGTGCGT GGCAATAAAA CCATTGATAT TAAAGTGCCC
GACAACATAT TGAACAAAGT TTCTGACTTA GGTATTGAGG CATTTATCAG CCGTAAACCG
TTGCTTACTG CAACTATCGA CAGCGTGCCC CCGGGCTTGC CAGCTGATAA GGCCGGCTTA
AAAGCTGGCG ACAGGATTGT ATCTGTACAC AGCAAACCTG TAAAATATGA TGAAGATGTT
AAGGAAGAGC TCACAAAATA TAAAGGCAAG ACAGTAGATT TTAAAATAAA CAGAAGCGGG
CAATTGCTGG ATGTGAATGT AGCGTTGGAT ACTGCAGGAA AAATGGGCCT TTTCTTTAAT
GCCAATGAGA TCAAAGAAGA AACGCTCAAA TATGGTTTTT TTGCGGCTTT ACCGGTAGGT
ATTGATCAGG CATGGAAAAC TTTTAGCGAC AATGCAAAAG GGATATGGAA GGTAGTTACA
GGGAAAATCA AACCCAACAA GGCTTTTTCA GGCCCGGTAG AGATTGCACG TAAAGTTTAT
GGTGGTGAGT GGATATGGGC TAGGTTCTGG GCTTCTACAG GCTTTATATC TATTGCACTG
GCATTTATGA ATTTATTGCC TATCCCGGCT TTAGATGGGG GACATGTGGT GTTCCTGATC
ATCGAAATGA TCAAAGGAAA ACCCCTGGGC GATAAATTTA TGGAGCGTGC ACAGATTGTA
GGTTTTGTAA TGCTGCTGTC GCTGATGGTA TTTGTGCTCG GGAATGATAT CTTTAAAGCT
TTCTTTAAGC ATTAG
 
Protein sequence
MSGLIMAAQL LLGLSILVIL HELGHFLAAR AFGIKVEKFY LFFDAWGVKL FSFKKGDCEY 
GIGWLPLGGY VKIAGMIDES MDTEQMQQPA QPWEFRSKPA WQRLIVMLGG VFVNIVVGIF
IFWMLTFKYG ETYIANSSVV SGINPGSIGK EIGLQKGDRV IAVNGNKVIR FEELISSKVL
LGNTNLTVVR GNKTIDIKVP DNILNKVSDL GIEAFISRKP LLTATIDSVP PGLPADKAGL
KAGDRIVSVH SKPVKYDEDV KEELTKYKGK TVDFKINRSG QLLDVNVALD TAGKMGLFFN
ANEIKEETLK YGFFAALPVG IDQAWKTFSD NAKGIWKVVT GKIKPNKAFS GPVEIARKVY
GGEWIWARFW ASTGFISIAL AFMNLLPIPA LDGGHVVFLI IEMIKGKPLG DKFMERAQIV
GFVMLLSLMV FVLGNDIFKA FFKH