Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3176 |
Symbol | |
ID | 8254295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3780867 |
End bp | 3782201 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936829 |
Product | membrane-associated zinc metalloprotease |
Protein accession | YP_003093433 |
Protein GI | 255533061 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.836726 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGGAT TGATTATGGC GGCCCAGTTA CTTCTGGGAT TATCAATATT GGTAATTTTA CATGAGTTGG GACATTTTTT GGCGGCACGT GCCTTTGGGA TTAAAGTAGA GAAATTCTAC CTGTTCTTTG ATGCATGGGG TGTTAAGCTG TTTAGCTTTA AAAAGGGCGA TTGTGAATAT GGCATTGGCT GGCTGCCATT GGGTGGCTAT GTGAAGATCG CAGGGATGAT AGACGAATCT ATGGATACCG AGCAGATGCA ACAGCCGGCA CAACCCTGGG AGTTTAGATC AAAACCTGCC TGGCAGCGCC TCATTGTAAT GCTTGGTGGT GTATTTGTAA ATATAGTGGT TGGTATTTTT ATTTTCTGGA TGCTGACCTT TAAATATGGC GAAACTTATA TTGCCAATAG TTCTGTTGTG AGCGGGATAA ACCCTGGCAG TATAGGTAAA GAGATCGGTC TGCAAAAAGG AGATCGGGTA ATTGCTGTAA ATGGCAATAA AGTAATTCGT TTTGAAGAGC TGATCAGTTC AAAAGTTTTA CTGGGCAATA CCAACCTTAC GGTAGTGCGT GGCAATAAAA CCATTGATAT TAAAGTGCCC GACAACATAT TGAACAAAGT TTCTGACTTA GGTATTGAGG CATTTATCAG CCGTAAACCG TTGCTTACTG CAACTATCGA CAGCGTGCCC CCGGGCTTGC CAGCTGATAA GGCCGGCTTA AAAGCTGGCG ACAGGATTGT ATCTGTACAC AGCAAACCTG TAAAATATGA TGAAGATGTT AAGGAAGAGC TCACAAAATA TAAAGGCAAG ACAGTAGATT TTAAAATAAA CAGAAGCGGG CAATTGCTGG ATGTGAATGT AGCGTTGGAT ACTGCAGGAA AAATGGGCCT TTTCTTTAAT GCCAATGAGA TCAAAGAAGA AACGCTCAAA TATGGTTTTT TTGCGGCTTT ACCGGTAGGT ATTGATCAGG CATGGAAAAC TTTTAGCGAC AATGCAAAAG GGATATGGAA GGTAGTTACA GGGAAAATCA AACCCAACAA GGCTTTTTCA GGCCCGGTAG AGATTGCACG TAAAGTTTAT GGTGGTGAGT GGATATGGGC TAGGTTCTGG GCTTCTACAG GCTTTATATC TATTGCACTG GCATTTATGA ATTTATTGCC TATCCCGGCT TTAGATGGGG GACATGTGGT GTTCCTGATC ATCGAAATGA TCAAAGGAAA ACCCCTGGGC GATAAATTTA TGGAGCGTGC ACAGATTGTA GGTTTTGTAA TGCTGCTGTC GCTGATGGTA TTTGTGCTCG GGAATGATAT CTTTAAAGCT TTCTTTAAGC ATTAG
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Protein sequence | MSGLIMAAQL LLGLSILVIL HELGHFLAAR AFGIKVEKFY LFFDAWGVKL FSFKKGDCEY GIGWLPLGGY VKIAGMIDES MDTEQMQQPA QPWEFRSKPA WQRLIVMLGG VFVNIVVGIF IFWMLTFKYG ETYIANSSVV SGINPGSIGK EIGLQKGDRV IAVNGNKVIR FEELISSKVL LGNTNLTVVR GNKTIDIKVP DNILNKVSDL GIEAFISRKP LLTATIDSVP PGLPADKAGL KAGDRIVSVH SKPVKYDEDV KEELTKYKGK TVDFKINRSG QLLDVNVALD TAGKMGLFFN ANEIKEETLK YGFFAALPVG IDQAWKTFSD NAKGIWKVVT GKIKPNKAFS GPVEIARKVY GGEWIWARFW ASTGFISIAL AFMNLLPIPA LDGGHVVFLI IEMIKGKPLG DKFMERAQIV GFVMLLSLMV FVLGNDIFKA FFKH
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