Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3165 |
Symbol | |
ID | 8254283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3767736 |
End bp | 3768905 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 644936817 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003093422 |
Protein GI | 255533050 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTATACT TCGCCAGCAT TGCAATTTCT TTATACTTGT TCGTACTATT GGCAGTTAAG CCTAACAAAA TAACTGCAGA TAAACTACTC ATGATTTGGC AGCTAGTAGC AACGCTTCAC TTAGCCGGTT TATATTTACA GGTTTCAGGA AACTATAGCC AATTCCCCAA TTTAATAGGC TGGGGAGATT TATTAGCACT TGTGCATGGG CCTTTTTTGT ATCTATATAT CCTTCATCTA ACCACACCAG TAAAATTTAG CAAGAAAAAG CTACTTCATT TTTTACCTGT TGTTTTTGCC TATCTTTTAT GGATGTCTTT TTTGCTACAA AACCCAGAAC AAAAGCTATT GCTTTATGAC CAGGGCTTTT CCTCGCCTTA CTATAAAACC ATTGAAATCA TCACCAATAT TTGCATAATC ATTTCGGGAA TTATTTATGT ATCAGCCGCA ATTATTCTAC TGCATCGATA TAAGAAAAAA ATAAGCGAAG AATTTTCAAC TACAGATAAA ATCAGCTTGA ATTGGCTGCG TTACCTGATT GCAGGCATCG CTGGAATTTG GGTCTTTGTT ATTTTTTATC CTACAGCAGA GAGTATCTAT TTCAGTGCCT CGTTGTACAT CTGCTTCATC GGTTTTTTGG GTGTACGCCA ACAGCAAATA TTCAAAACCG CCAATGCCTC ATCCCGCTCT GCTGCTGAGC ATCCCAACTT TTCTACTCAA AAAGAAAACC TTTCAGAAGA GCCCGCTAAC GTGGCATTAA TGCCCAATAA AATAAAATAC GACTGGTCTT CACTTACGGA TGCCGAAGCT GAACGTATTT TCCAGCATCT TAACACGATA ATGGCACAAG AAAAACTATA TAAAAATGTG GAACTTACAC TAAGTAAGTT AGCCGAAGCC TTAAAGCTAA AAGATGCTGT GCTATCGCAA GTGATCAATT CTAAGTTTAA CAAGAGCTTT TACGACTATA TCAATTCACT TAGGGTAGAT GAATGTGTAA AAATGATTGC TGATGAAAAA AACCAAAACT ATACACTGCT ATCGATAGCT TTTGATTGTG GCTTCAATTC TAAATCTTCA TTCAATCGCA ATTTTCGCAA ATTCACGGGT AAATCTCCTT CAGATTTTTT CAGAAAACCA ACCGAGCTAA TATACCACAA GGCGTTGTAG
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Protein sequence | MLYFASIAIS LYLFVLLAVK PNKITADKLL MIWQLVATLH LAGLYLQVSG NYSQFPNLIG WGDLLALVHG PFLYLYILHL TTPVKFSKKK LLHFLPVVFA YLLWMSFLLQ NPEQKLLLYD QGFSSPYYKT IEIITNICII ISGIIYVSAA IILLHRYKKK ISEEFSTTDK ISLNWLRYLI AGIAGIWVFV IFYPTAESIY FSASLYICFI GFLGVRQQQI FKTANASSRS AAEHPNFSTQ KENLSEEPAN VALMPNKIKY DWSSLTDAEA ERIFQHLNTI MAQEKLYKNV ELTLSKLAEA LKLKDAVLSQ VINSKFNKSF YDYINSLRVD ECVKMIADEK NQNYTLLSIA FDCGFNSKSS FNRNFRKFTG KSPSDFFRKP TELIYHKAL
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