Gene Phep_3165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3165 
Symbol 
ID8254283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3767736 
End bp3768905 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content37% 
IMG OID644936817 
Producthelix-turn-helix- domain containing protein AraC type 
Protein accessionYP_003093422 
Protein GI255533050 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTATACT TCGCCAGCAT TGCAATTTCT TTATACTTGT TCGTACTATT GGCAGTTAAG 
CCTAACAAAA TAACTGCAGA TAAACTACTC ATGATTTGGC AGCTAGTAGC AACGCTTCAC
TTAGCCGGTT TATATTTACA GGTTTCAGGA AACTATAGCC AATTCCCCAA TTTAATAGGC
TGGGGAGATT TATTAGCACT TGTGCATGGG CCTTTTTTGT ATCTATATAT CCTTCATCTA
ACCACACCAG TAAAATTTAG CAAGAAAAAG CTACTTCATT TTTTACCTGT TGTTTTTGCC
TATCTTTTAT GGATGTCTTT TTTGCTACAA AACCCAGAAC AAAAGCTATT GCTTTATGAC
CAGGGCTTTT CCTCGCCTTA CTATAAAACC ATTGAAATCA TCACCAATAT TTGCATAATC
ATTTCGGGAA TTATTTATGT ATCAGCCGCA ATTATTCTAC TGCATCGATA TAAGAAAAAA
ATAAGCGAAG AATTTTCAAC TACAGATAAA ATCAGCTTGA ATTGGCTGCG TTACCTGATT
GCAGGCATCG CTGGAATTTG GGTCTTTGTT ATTTTTTATC CTACAGCAGA GAGTATCTAT
TTCAGTGCCT CGTTGTACAT CTGCTTCATC GGTTTTTTGG GTGTACGCCA ACAGCAAATA
TTCAAAACCG CCAATGCCTC ATCCCGCTCT GCTGCTGAGC ATCCCAACTT TTCTACTCAA
AAAGAAAACC TTTCAGAAGA GCCCGCTAAC GTGGCATTAA TGCCCAATAA AATAAAATAC
GACTGGTCTT CACTTACGGA TGCCGAAGCT GAACGTATTT TCCAGCATCT TAACACGATA
ATGGCACAAG AAAAACTATA TAAAAATGTG GAACTTACAC TAAGTAAGTT AGCCGAAGCC
TTAAAGCTAA AAGATGCTGT GCTATCGCAA GTGATCAATT CTAAGTTTAA CAAGAGCTTT
TACGACTATA TCAATTCACT TAGGGTAGAT GAATGTGTAA AAATGATTGC TGATGAAAAA
AACCAAAACT ATACACTGCT ATCGATAGCT TTTGATTGTG GCTTCAATTC TAAATCTTCA
TTCAATCGCA ATTTTCGCAA ATTCACGGGT AAATCTCCTT CAGATTTTTT CAGAAAACCA
ACCGAGCTAA TATACCACAA GGCGTTGTAG
 
Protein sequence
MLYFASIAIS LYLFVLLAVK PNKITADKLL MIWQLVATLH LAGLYLQVSG NYSQFPNLIG 
WGDLLALVHG PFLYLYILHL TTPVKFSKKK LLHFLPVVFA YLLWMSFLLQ NPEQKLLLYD
QGFSSPYYKT IEIITNICII ISGIIYVSAA IILLHRYKKK ISEEFSTTDK ISLNWLRYLI
AGIAGIWVFV IFYPTAESIY FSASLYICFI GFLGVRQQQI FKTANASSRS AAEHPNFSTQ
KENLSEEPAN VALMPNKIKY DWSSLTDAEA ERIFQHLNTI MAQEKLYKNV ELTLSKLAEA
LKLKDAVLSQ VINSKFNKSF YDYINSLRVD ECVKMIADEK NQNYTLLSIA FDCGFNSKSS
FNRNFRKFTG KSPSDFFRKP TELIYHKAL