| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3126 |
|---|
| Symbol | |
|---|
| ID | 8254244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3733590 |
|---|
| End bp | 3734924 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644936779 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003093384 |
|---|
| Protein GI | 255533012 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGAA TAGCCATGAA AATTCTGCTG CTTTTATGCT TTAGCGGATT TAGTCTGCCA
GGCTTCAGCC AGGATACTGC ATCAAAAGTT TTGCCGCCGG TCTGGGACCT TGCAGCATGT
TTGCAATATG CTAAAGAGAA CAACATTCAG ATCAGGAGCC TGCAGCTGGA CAAACAAAGT
GCAGAACAGG ATCAGCTGCT GGCCAAATCG GCCTTACTGC CGGACCTGTA TGGCTCGGCT
TCGCAGAACT TTAACCATTA TAACCAGGCT ACAGCTACCA ATGGAAATGC GCTCAATTAC
TCCGGATCAG TAGGTTTAAA TTCTTCATGG ACACTCTATA GAGGTGGCTA CCTTAAAACT
GACATCAAAC AAAAGGACTT ATCTGTCCAG GCTGCCAATT TTAACATACT GCAGCAGGAA
AACGACATTA CTTTACAGAT TACCCAGGCT TACCTGAACA TTCTGGTAGA TAAGGAAAGT
ATTATCTATA ACCAGGACCT TGTAAAAACT TCCGAAGCCC AGCTTGACCA GGCCCAGCGC
CAGTTTAAAG CAGGTTCGGT AGCACGTAAA GTTGTTGCAC AGTTTGAGGC CCAGCTGGCG
GGCGACAGGT ATAACCTGAA TGCAGCTGAA AATGCTGAGC GAAAAGATAA AATAACACTT
AAACAATTGC TGCAACTTCC TGATTCAAAA CGTTTCGACA TTGTGAAACC CGATACCATA
CTTTCTGTAG AAAATATAAC AGATCTAAAC ACAGTTCAGC AATATGCCCT TCAAAACCGC
CCGGAAGTAA AAAATGCCGA ATTGGGTGTA CAGATCTCCG ACCTGGGGCT CAGCAAGGCC
AGAGCAGGTT ATCTGCCTTC ATTAACACTC GGTGCGGGTA TCGGCAGCAG TTATGCCAGA
GATCCGAATT ACAATGTATT CAGGCAATTT GACAATAATT TTAACCAGCA GGTCGGCTTC
ACTTTATCGG TCCCGATTTT TACCAACCGG CAGAACAAGA CCAATGTGGC CAAAGCGAAA
ATTGACATTG CCCAGGCAAA GCTGACTTTG GAAAACACAA AAACTACGCT GGCATTAAAT
ACTGAAAGCG CCTATATCAA TGCGCAGAAT TCACAAAGCC AATACTTATC TGCTGCCGAA
CAGCTAAAAT ATAATCAGGA AGTATTCCGC ATTGCCAATC AGGAATTAAA AATTGGTGCT
GCAAATATTG TTGAGTTCTA TCAGCAAAGA AACCTGTATG TACAGGCTAT GCAATCTTAT
ATACAGGCCA AATACAATGC GGCACTGGCT GCAAAAATCT ATGAATTTTA CCTCGGAACA
CCTATAAAAT TGTAA
|
|---|
| Protein sequence | MSRIAMKILL LLCFSGFSLP GFSQDTASKV LPPVWDLAAC LQYAKENNIQ IRSLQLDKQS
AEQDQLLAKS ALLPDLYGSA SQNFNHYNQA TATNGNALNY SGSVGLNSSW TLYRGGYLKT
DIKQKDLSVQ AANFNILQQE NDITLQITQA YLNILVDKES IIYNQDLVKT SEAQLDQAQR
QFKAGSVARK VVAQFEAQLA GDRYNLNAAE NAERKDKITL KQLLQLPDSK RFDIVKPDTI
LSVENITDLN TVQQYALQNR PEVKNAELGV QISDLGLSKA RAGYLPSLTL GAGIGSSYAR
DPNYNVFRQF DNNFNQQVGF TLSVPIFTNR QNKTNVAKAK IDIAQAKLTL ENTKTTLALN
TESAYINAQN SQSQYLSAAE QLKYNQEVFR IANQELKIGA ANIVEFYQQR NLYVQAMQSY
IQAKYNAALA AKIYEFYLGT PIKL
|
|---|
| |