| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3113 |
|---|
| Symbol | |
|---|
| ID | 8254231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3721279 |
|---|
| End bp | 3722853 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936767 |
|---|
| Product | glycoside hydrolase family 28 |
|---|
| Protein accession | YP_003093372 |
|---|
| Protein GI | 255533000 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00001805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAC TATTCTTAAT TATGCGGAAT TATTTATTCA TCCTACTGAC CAGCATTTCA
ATCCTTACCC GGGCGGCCGA TGTAGAGGTC ACTACTTATG GAGCCAAAGG CGATGGACTT
ACTGTAAATA CCACTGCCAT TCAGAAAAGC ATCGATGCCT GTGCAGCATC GGGTGGGGGT
AAGGTAATCT TCCCTGCTGG TCATTTCATG AGTGCAACTG TAGTGCTAAA AAGTAATGTA
ACCCTTTACC TTTCCGACGG ATGTACTTTA ACCGGTGTTA AAGGTGCTGC CAATTACCCT
TACCAGCAGG TCAGCATTCC ATTTTATGGC GAAAACTGGG CAAAGCAGGC ACTGATCTTT
GCGCATAAAG CCGAAAATAT AGGTATTGAA GGTCCCGGAA CAATAGACGG ACAGGGGGCA
AGTTTTGAGA TCAATACCAT TAAAAAGCCA GACCGCTATA TGAACAGACC TTACCTGATC
TGGTTTGTAG CCTGTAAGAA AGTTAGCGTT AAACAGGTAC ACCTGCGCAA TTCTGCTTTC
TGGATGCAAC ATTACCTGGG TTGTGAAGAT GTAGTGATCG ATGGTATTTC TATTTGGAAC
CATTCCAATA AAAACAACGA TATGATCGAT ATTGATGGCT GTAAAAATGT AAGGATCACC
AATGTAAACG GCGATTCGGA CGATGATGGC CTGACTTTAA AAAGTACTTC CAAACTCATT
TCAGAGAATA TAGTGATCAG CAACTGCGTG TTTAGCAGTC ACTGTAACGG ACTCAAGTTC
GGTACCGAAT CTACCGGTGG TTTCAGAAAC GTTACCATCA GCAATATCGT CATCAAGCCT
TCGGCACAGC TGACCACCAT TTATGGTAAA CCGGCCGGCA ACAGTGGCAT TTCACTGGAA
ATGGTTGATG GGGGCATTAT GGAAAATATC AGTATCAGTA ACGTAGTCAT AGACGGGCCG
CAGGTACCGC TGTTTATCCG CCTGGGCAAC AGGGCAAGAA AACATACCGA TAATGCCGCT
GATCCGGGAA TTGGGGTAGC CAGGAACATC CATATCTCCA ATGTAACGGC TACAGGGGCC
GATATTACCG GCAGCTCAGT CATCGGACTT GAAAATGCCA TCATAGAAAA TGTTTCTTTA
AGCAACATCT CTATTTCCAG CTCTGGCGGG GCAAAGGCCG ATGCCATGTT CCGTAAACTG
GAAACCCTGG CCGATCATTA TCCAGAAGCC ACTATGTTTG GTCCACTGCC GGCTTACGGA
TTGTACGTAA AACATGTAAA AGGAATCCGC TTAAATGACA TCAGGCTTTC TTTTACCGGT
GATGACGAAC GTCCGGCCAT AGCCCTTGAA AATACAAGCG ATTTTGAGCT TAGGGGGCTC
AATATGGCCA GTACCGCCAA TACAAATACT GCAGTTTATC TGAAAAATGT AGCGAACGGC
TTTGTTACCG CAAATACTGT ATATACACCT GCAAAGTATT TTATCTGGAA AGAAGGCGCT
GTAGGCAATG TCTCGGTAAG CAATAACCAG CACCCGAAAA TTAAATCAGT AAGCAACCAA
ACTACAAAAA AATGA
|
|---|
| Protein sequence | MLKLFLIMRN YLFILLTSIS ILTRAADVEV TTYGAKGDGL TVNTTAIQKS IDACAASGGG
KVIFPAGHFM SATVVLKSNV TLYLSDGCTL TGVKGAANYP YQQVSIPFYG ENWAKQALIF
AHKAENIGIE GPGTIDGQGA SFEINTIKKP DRYMNRPYLI WFVACKKVSV KQVHLRNSAF
WMQHYLGCED VVIDGISIWN HSNKNNDMID IDGCKNVRIT NVNGDSDDDG LTLKSTSKLI
SENIVISNCV FSSHCNGLKF GTESTGGFRN VTISNIVIKP SAQLTTIYGK PAGNSGISLE
MVDGGIMENI SISNVVIDGP QVPLFIRLGN RARKHTDNAA DPGIGVARNI HISNVTATGA
DITGSSVIGL ENAIIENVSL SNISISSSGG AKADAMFRKL ETLADHYPEA TMFGPLPAYG
LYVKHVKGIR LNDIRLSFTG DDERPAIALE NTSDFELRGL NMASTANTNT AVYLKNVANG
FVTANTVYTP AKYFIWKEGA VGNVSVSNNQ HPKIKSVSNQ TTKK
|
|---|
| |