Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3110 |
Symbol | |
ID | 8254228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3714637 |
End bp | 3717468 |
Gene Length | 2832 bp |
Protein Length | 943 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936764 |
Product | TonB-dependent receptor |
Protein accession | YP_003093369 |
Protein GI | 255532997 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.183565 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT CTATTCTTAA ATCATATCTC ATGTGGATAT TAGCGGTTAT CATTTCCGTC GCAGGGATAA GTGTTCCTGC ACATGCCCAA ACCGTGGGCA ACATCAGGGG TAAAGTGATC GATGAGCAAG GAGGCGCATT GCCCGGAGCA TCTGTAAAGA TCAAGGGTAC AAATAAAGGT GTTTCCAGTA GTACCACTGG TGATTTTCAA CTGAACGATC TGCAGCCAGG CAATTATGTA GTTACCGTAT TTTATATGGG ATATAGCCCT GTTGAAACCA ATGTTGAACT GAAAGCCGGA CAAACACTGG TACAAAACAT CCGGCTGGTA GCCAGCAGTG TTGCTTTAAA GGGTGTTACA GTATCCGGGG TAATAGAAGG ACAGCAGAAA GCCCTGAACC AGCAAAGAAA TGCCGACAAC ATCAAGCAGG TGATCTCGGC CGATCTGATG GGACGTTTCC CTGATCTCAA CGTAGCTGAA TCGCTGCAAA GGCTTCCGGG TGTAACAATC GGCCGTGAGC AGGGTGAAGG CTCAACGGTA CAGCTGCGTG GTACACCCGG TGGCTATACC AATATCAATA TCAATGGCGA ACAGATTATG GGTACGCAGG AGCTTGGCCA GCGTAATGCA CAGCTGGACC TGATCCCGGC AAATGTGCTG GCCTCTATGG AGGTTATCAA AACCCTGACC CCTGACCTGG ATGGGGATGC CATTGCGGGT GCAATTAACT TAAAAACACC TACTGCCATC AGTTTAAAAC CACAGTTGTC GGTCGACTTA GGTGGTGGTT ATAACAAGCT GCGCAACAAT TCAAACGGCA TTGGCAACAT CAGCTTTGGC CGTCGTTATG GTGCAACGGA TGATATGCCC AACGGTAAAC TGGGGGTTAC GGTATCTGGT AGTTATTACA AAACAAACAA TGGCTATGAT GAGATCAATG CACAGGCCTG GCAGAAAAAA GATTTTATTG GTAACAAGGA CTCCATCTAT TTCCCTACAG ATATCCGTCT CGTTTATCTG GAAAATGAAC GTACCCGTAT GGGGGCAACC ACCACCATCG ATTATAGCTT TAGCCCAACT ACTTCCATTG TGGCGAATTT AACCTTTAAC AGTCTGGACA ACGATGCTAC CCGCTACCGC AAACGTACAC GTATGCAAAC CGCCAATACC ACTTTTGCCA ATGGTGTTTA TACCACCACA AGAGGCAGGG GCTACAATGA GGTGCTGGAC AGACAAATGC GAAACAGCAA TATCAATTTC AGTTTGGAAG GTGAAACCAT GTTAAGTAAG GTTAAACTAG ATGGAGGAAT ATTTTTAACG GCTTCTAATT TTGATCAGCG TGCTGCGGCT TTTAATTATA TTACCGGTAA TGTTCCTTTA ACGATTACCG ATATATCTGG TGATTATATC CAGGCAACAG GTTCCACTGA TGCCAAAAAT AACGCAGCTT TATATAATTA TAATACCATT GAAGCGAACG ATTTTAAAAC ACAAGGCCGC AATGTTGTCG CACGCTTAAA CCTTACTTAT CCCTACAAAA TAGGAGATAA TGATGCTTAT TTTAAAATGG GTGCAAAAGT AAAAAGGATG AGCAACAAGC GTTTCAGACC CTCAAGTACA TTTGTTGCCA ACTATAGCGG GCCTGCTGGC GTAGGTAGCC TCAATAATTT TAAAGGAAAT TCAGAACTCG ATGCAGATTT TCTGGATAAC AACATCAATT TCGGTTTGAA CGTGGATAAG GATGCTACTA TAGACTTTTT TTACAACAAT CCTTCTTATT TTACACAGAA TGCAGACCAG AAGAAAATAT CAATTGATGC TTACTTCTAT GATGCACAGG AGAATGTAGT AGCCGGATAC CTGATGAATC GTATTCAATT TAAGCGGTTA ATGCTGTTAG GTGGTTTGAG GGTAGAAAGA ACAGATGTAG ATTATGACGC CAAACTGGTT AATCAGGATA AAGATGGGTT TCTCACTTCT TCTGTGCCTG TTAATTCTAA ATACAACTAT ACCAAATATT TACCAAACCT GCAGGGTAAA TATGACCTGG CTAAAAATAC AGTAGCACGT GGCGCTGTAT CTTTTGGTTA TTCCAGGCCT AATTTTAATG ATCTGGTACC CAGTCGTGTA GTAAGTATCC TGGCCCAAAC ATTAACTGAT GGTAACCCGG ATCTGAAACC TGCATTTGCT ACCAATTACG ATCTGTCTAT TGAGCAATAT TTAAGTAACC TGGGCATCCT TTCTGTTGGT GCATTTTATA AACACATTGA TAAGTTTCAG TACAATAGCG TGATTAATTT AACCGGTACT GAGTTTCCTG ATGCAGCTGC ATATAAAGGT TACCAATATT TCAAAGCTTA CAATGGAGAT CTGGCTAAAG TATTTGGTGT AGAAGTTAAC GCACAAACCA ATCTTACCTT TCTTCCTGGC ATTCTGAAAG GTATTTCCCT GTATGCAAAC TATACCTATA CCCATTCCAG AGCTGATGCT TTGGGCAGAA CTAAGCTTCG CTTACCAGGA CAAGCAGATC ATACCGCCAA TGGTTCGGTT TCTTACACTT TAAAAGGTTT TACACTGCAG GGAAATCTGA ACTATAATGG TGCTTATACT TCAACATTAG GTACAGATGA TGCTACTGAT GTAATCAGGG CTGCGCGTTA CCAGTTAGAT GTGAATGCTT CTTACCGCAT CACCAAAAAG CTGACCATTT ATGCTGAGGG GGTGAACTTA ACCAACCAGC CTCAGGTAGA ATACTTTGGC GAGCGTTCAA GAATTTTTAC CAATACATTT TATGATTTTT CGGCCCGTGC CGGATTAAAA TACCGTTATT AA
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Protein sequence | MKKSILKSYL MWILAVIISV AGISVPAHAQ TVGNIRGKVI DEQGGALPGA SVKIKGTNKG VSSSTTGDFQ LNDLQPGNYV VTVFYMGYSP VETNVELKAG QTLVQNIRLV ASSVALKGVT VSGVIEGQQK ALNQQRNADN IKQVISADLM GRFPDLNVAE SLQRLPGVTI GREQGEGSTV QLRGTPGGYT NININGEQIM GTQELGQRNA QLDLIPANVL ASMEVIKTLT PDLDGDAIAG AINLKTPTAI SLKPQLSVDL GGGYNKLRNN SNGIGNISFG RRYGATDDMP NGKLGVTVSG SYYKTNNGYD EINAQAWQKK DFIGNKDSIY FPTDIRLVYL ENERTRMGAT TTIDYSFSPT TSIVANLTFN SLDNDATRYR KRTRMQTANT TFANGVYTTT RGRGYNEVLD RQMRNSNINF SLEGETMLSK VKLDGGIFLT ASNFDQRAAA FNYITGNVPL TITDISGDYI QATGSTDAKN NAALYNYNTI EANDFKTQGR NVVARLNLTY PYKIGDNDAY FKMGAKVKRM SNKRFRPSST FVANYSGPAG VGSLNNFKGN SELDADFLDN NINFGLNVDK DATIDFFYNN PSYFTQNADQ KKISIDAYFY DAQENVVAGY LMNRIQFKRL MLLGGLRVER TDVDYDAKLV NQDKDGFLTS SVPVNSKYNY TKYLPNLQGK YDLAKNTVAR GAVSFGYSRP NFNDLVPSRV VSILAQTLTD GNPDLKPAFA TNYDLSIEQY LSNLGILSVG AFYKHIDKFQ YNSVINLTGT EFPDAAAYKG YQYFKAYNGD LAKVFGVEVN AQTNLTFLPG ILKGISLYAN YTYTHSRADA LGRTKLRLPG QADHTANGSV SYTLKGFTLQ GNLNYNGAYT STLGTDDATD VIRAARYQLD VNASYRITKK LTIYAEGVNL TNQPQVEYFG ERSRIFTNTF YDFSARAGLK YRY
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