Gene Phep_3019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3019 
SymbolasnC 
ID8254131 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3610277 
End bp3611725 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content41% 
IMG OID644936668 
Productasparaginyl-tRNA synthetase 
Protein accessionYP_003093279 
Protein GI255532907 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0017] Aspartyl/asparaginyl-tRNA synthetases 
TIGRFAM ID[TIGR00457] asparaginyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.852561 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00877585 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATACACA GAGAAAAAGT AAAGAGTCTG CTCGAGACAG AAGAGTTTAA CAGAGAAGTA 
ACAGTTATGG GTTGGGTACG TACCTTCCGT AACAATCAGT TTATAGCTAT AAATGATGGC
TCCTGCATGG GAAACATCCA GGTTGTTGTT GATTTTAATC ATACGGATGA AGCCTTATTG
AAACGCATTA CTACTGGTGC AGCAATTGCT GTAAATGGTA TTATTGTGGA ATCCGTTGGA
AAAGGACAAA GAGTTGATAT AAAAGCAACC TCCATAGAAA TACTAGGTGA TAGTGATCCG
GAGAAATTCC CTTTACAACC TAAAAAACAT AGCTTAGAGT TTTTAAGGGA AATCGCACAC
CTGCGTTTTC GTACCAATAC TTTTAATGCG ATATTTAAGG TACGCCATGC ACTGGCCTTT
GCAATACACC AGTTTTACAA TGAAAGAGGC TTTGTGTATA TGCACACACC AATTATTACA
GCTTCAGATG CTGAAGGTGC CGGAGAAATG TTCAGAGTAA CGACACTTGA CCTGGAAAAC
CCGCCACGCA CTGAAGATGG TAAGGTAGAT TTTTCTGAGG ATTTCTTTGC CCGCTCTACA
AACCTAACAG TTTCAGGTCA GCTGGAAGGC GAGCTTGCGG CTATGGCATT TGGACAGATT
TATACTTTCG GACCAACCTT TAGGGCTGAA AACTCAAATA CAACACGCCA TCTGGCTGAA
TTCTGGATGG TAGAGCCTGA GGTTGCTTTT GCCGACCTGG AAGACAACAT GCAGCTGGCA
GAGGACATGC TCAAATACGT GATCCGTTAT GCTTTGGACA ACTGCGCAAC AGAAATTGAT
TTCTTAAACA ACAGGTTACT GGAAGAAGAG AAATCAAAAC CACAAAATGA GCGCAGTGAA
ATGTCGCTGA TTGAAAAATT AAATTTCTGT CTGGATAATG ATTTTGAAAG GTTAACGTAT
ACCGAAGCCA TTAAAATTTT AAAATCGTCG AAACCAAATC AGAAAAAACA GTTCAAATAC
CTGATTGATG AATGGGGTGC TGACCTGCAA TCGGAACACG AGCGCTACCT GGTTGAAAAA
CATTTTAAGA AACCGGTAAT CCTGACAGAT TACCCTGCCG ATATTAAATC ATTTTACATG
AGACAAAATG AACCCGATGA AGTGGGAAGA AAAACGGTAG CCGCAATGGA TATCCTTTTC
CCTGGAATAG GAGAAATGGT TGGAGGTTCA CAAAGGGAAG AACGTATGGA TAAATTGGTT
GCCAGAATGG AAGAACTAAA TATTCCACAG GAAGAACTTT GGTGGTTTTT AGACACCAGA
CGTTTCGGTT CGGCACCGCA CTCTGGTTTT GGCCTTGGCT TTGAAAGACT TGTTCTTTTT
GTAAGTGGCA TGACCAACAT CAGGGATGTT ATTGCATTTC CCCGTTTCCC TAAGAATGCA
GAATTTTAA
 
Protein sequence
MIHREKVKSL LETEEFNREV TVMGWVRTFR NNQFIAINDG SCMGNIQVVV DFNHTDEALL 
KRITTGAAIA VNGIIVESVG KGQRVDIKAT SIEILGDSDP EKFPLQPKKH SLEFLREIAH
LRFRTNTFNA IFKVRHALAF AIHQFYNERG FVYMHTPIIT ASDAEGAGEM FRVTTLDLEN
PPRTEDGKVD FSEDFFARST NLTVSGQLEG ELAAMAFGQI YTFGPTFRAE NSNTTRHLAE
FWMVEPEVAF ADLEDNMQLA EDMLKYVIRY ALDNCATEID FLNNRLLEEE KSKPQNERSE
MSLIEKLNFC LDNDFERLTY TEAIKILKSS KPNQKKQFKY LIDEWGADLQ SEHERYLVEK
HFKKPVILTD YPADIKSFYM RQNEPDEVGR KTVAAMDILF PGIGEMVGGS QREERMDKLV
ARMEELNIPQ EELWWFLDTR RFGSAPHSGF GLGFERLVLF VSGMTNIRDV IAFPRFPKNA
EF