| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2842 |
|---|
| Symbol | |
|---|
| ID | 8253950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3387070 |
|---|
| End bp | 3388509 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644936488 |
|---|
| Product | Alpha-L-fucosidase |
|---|
| Protein accession | YP_003093103 |
|---|
| Protein GI | 255532731 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3669] Alpha-L-fucosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00471674 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGAG GATTAATTTT AACCGTTTTA CTGGCTTTTC CGCTACTTTC AAATGCACAG
GAAGATATTT ATGATCCATC TGCCCAATAT GAATATCCCA AGGATCCATT GGTGAGGAAA
AAACTGGACC AATGGCAGGA CCTGAAGTTT GGTGTGATTT TGCATTGGGG TGTTTACACT
GCTGCAGGAA TTCCGGAATC ATGGGTAATA AGTGGCGAGC CATGGCCTAA ACGTGATACC
ACTATGGCTT ATGAAGATTA TAAAAAATGG TATTGGGGTT TGGCTTCAAA ACTTAATCCG
GTAAAGTTCA ATCCGGATAA ATGGGCTGAA ATTTCTAAAA ATGCAGGGAT GAAATATATC
GTATTTACCA CCAAGCACCA TGATGGGTTT AATATGTTCG ATACCAGGCA AAGCGATTAT
AAAATTACCA ATGGACCATT CGCAAAAAAT CCGAAAGCTG ATGTGACCAA ATACATTTTT
GATGCCTACC GTAAACAGGG AATGATGATT GGTGCTTATT TTTCAAAGCC AGACTGGCAT
TCGCAGGATT TCTGGTGGGA CCGGTTTCCT ACACCATCCC GGAATATCAA CTACGATATG
AGCAAATATC CACAGAAGTG GCAGAAATTT AAAGATTTTA CCTATAACCA AATTGCTGAA
ATTTTGGGGA ACTATGGCCA GGTAGATATT TTATGGCTGG ACGGTGGCTG GGTGCGCCCG
GCATTAAAAG CTGAGCTTGC GAGGGAAGAA TGGGGAATGA ACAAAAGAGG AAGGGCAAAT
TATCCTAACT TTAATCAGGA GGTAGATATG CCACGCATTG CCAAAATGGC CCGCGAAAAA
CAACCCGGCA TATTGGTGGT GGACAGAACA GTACACGGCC CTTATGAAAA TTACCGGACA
CCAGAACAAT CTGTACCAAA AACTCAGATG AAAGAGCCCT GGGAAACCTG TATCACTTTA
ACAAAAAGCT GGAGCTACCG AAGCGAGGAA AAAGCAAAAT CTGGAACCTG GGTAATTCAT
ACCCTGGCTG AGATCGTAGC CAAGGGTGGA AATATGCTTT TGGGTTTTGG CCCAACACCA
GAAGGTGAAT TTCCTAAAGA AGTTGAAAAG CCTTTAGAAG AGGTAGGACA ATGGCTAAAA
CAAAATGGAG AAGCCATTTA CGGTACCAGA ATAACCGATA ATTATAATGA TGGGACAACC
TGGTTCACGC AGTCAAAGGA TGGTAAAATA AAATATGCTA TTGTCTGCGT TAAGGAAGGT
GAAAGCCTAC CTGCTACCCT GAAATGGAAA GGAAATATAC CTGCCGGGGG TAGTAAGATC
AGGTTAATCT CAACCGGTAA AAATGTGAAC TGGAAGCAAG AAGGAGAAGA GGTTGTGATC
GTTTTACCCA AAAACCTGAT GGGAAAGAAA ACACAGGCTT TGGCTTTTGC ATTTAACTAA
|
|---|
| Protein sequence | MFRGLILTVL LAFPLLSNAQ EDIYDPSAQY EYPKDPLVRK KLDQWQDLKF GVILHWGVYT
AAGIPESWVI SGEPWPKRDT TMAYEDYKKW YWGLASKLNP VKFNPDKWAE ISKNAGMKYI
VFTTKHHDGF NMFDTRQSDY KITNGPFAKN PKADVTKYIF DAYRKQGMMI GAYFSKPDWH
SQDFWWDRFP TPSRNINYDM SKYPQKWQKF KDFTYNQIAE ILGNYGQVDI LWLDGGWVRP
ALKAELAREE WGMNKRGRAN YPNFNQEVDM PRIAKMAREK QPGILVVDRT VHGPYENYRT
PEQSVPKTQM KEPWETCITL TKSWSYRSEE KAKSGTWVIH TLAEIVAKGG NMLLGFGPTP
EGEFPKEVEK PLEEVGQWLK QNGEAIYGTR ITDNYNDGTT WFTQSKDGKI KYAIVCVKEG
ESLPATLKWK GNIPAGGSKI RLISTGKNVN WKQEGEEVVI VLPKNLMGKK TQALAFAFN
|
|---|
| |