| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2709 |
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| Symbol | |
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| ID | 8253817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3183868 |
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| End bp | 3185337 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644936357 |
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| Product | RagB/SusD domain protein |
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| Protein accession | YP_003092972 |
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| Protein GI | 255532600 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000284151 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.714697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAGA TATATGTAAA AACAATGGTT CTTCTGATGC TGGGCACTTT AGTGCTTTCC
TGCAAGAAGA CCTTAGATAC TGATCCGCTC TCCAATCCGA ATACCGCAAA TTTCTGGAAA
ACAGAAGGAG AAGCCAATAA GGCACTGATT GCCTGTTACA GCAAGCTGAA AGAACCGATT
ATTTCAAATG GTCCCAGTCA GAGCGGTAAC TTCCTGTTTT GGGAAGCACT GTCTGACAAT
GCCTCCAATA CATCAAATTA TGAATCATTT GATATTGTAA TGCGGGGCGA CCACAACTCG
GCCACAACCG GTATAGTGAG TAAGTCGTTC ACCTTCGGTT TTCAGGGAAT TGCTTACTGC
AATTATTTTA TGGCCAATAT TGACCGGGTA CCATCAATGG CAGAGGCTAC ACGCAACAGA
ATGAAGGGCG AAGCATTGTT TCTGAGGGCT TTCTATTATA ACGATCTCGC TCAGCTATAT
GGCGACCTGC CACTCATTTT AAAGCCTGCC AGCCTGGATG ATGATTTTAA AAATACTCCG
AGATCGCCAA AAGCAGATGT GGTAACACAG ATACTGAAAG ATCTGGACCT GGCCATTTCT
TACTTACCGG CTACAGCTTA TACAGACGGA CGTGCAGTAA AAGGATCAGC AATAGCTTTA
AAAACCCGGG TATTGCTAAA TAACGAACGT TTTGGTGAGG CCGCAACTGC AGCCTGGAGC
CTGATCGGTG ATCCAGCCAA TCCATTCCAG CTAGCGGACA GTTATTCAGG GATATTTTTT
GGAAACCAGG CCAACAATAA AGAGATCATG TTCTCTGTAC AGTTTAAGGC CCCAGATGAT
TACCACTCTC TGGACCAGGT AATTGGTGGC AGGATGTCAG TATTTCCAAC CGTTGAACTC
AGAAATGCTT ATGAGCCTAA CGATCCGCGC AGAAAGATGA CCATTTTTGA AGCCAATGAT
CCATGGGCTT ACAATCCTGG AGGTTTTAAA CAAACAGGCA GTACAGCCGA AGGACAGATC
CCCTATACCA CCATGGCCTT CAAAAAATGG GTAAATACAG CCATAAACAA TGCATCCGGA
GCAACCCTGA GTGATCAGCA CATGGTCAAG ATCCGTTATG CCGATCTGTT ATTGATGTAT
GCCGAAGCCA TGTTCGAAAG CGGTCAGGGT GCCGATCTCA GGGCCTTAAA AGCCTTAAAC
GACGTTCGGG GAAGGCAGGG TGTAAACATG CCGGCTAAAC CTGCCCTTAC CAGGGAGATC
ATCAGAAACG AGAGAAGGGT AGAGCTTGCT TTTGAGGGAT TGCGTTATAA CGACCTGATC
CGCTGGAAAA TTGCCGCCCA GGTGATCCCT CTGGTTCCTT ATGATGCCAA AGGAACAAAA
CGTAAGTTCA AATCTTATCT TTTCCCAATC CCATTGGGGC AAATGGATAT CATGAGGAAC
GTATGGACAC AGAACCCCGA CTTTTTATAA
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| Protein sequence | MKKIYVKTMV LLMLGTLVLS CKKTLDTDPL SNPNTANFWK TEGEANKALI ACYSKLKEPI
ISNGPSQSGN FLFWEALSDN ASNTSNYESF DIVMRGDHNS ATTGIVSKSF TFGFQGIAYC
NYFMANIDRV PSMAEATRNR MKGEALFLRA FYYNDLAQLY GDLPLILKPA SLDDDFKNTP
RSPKADVVTQ ILKDLDLAIS YLPATAYTDG RAVKGSAIAL KTRVLLNNER FGEAATAAWS
LIGDPANPFQ LADSYSGIFF GNQANNKEIM FSVQFKAPDD YHSLDQVIGG RMSVFPTVEL
RNAYEPNDPR RKMTIFEAND PWAYNPGGFK QTGSTAEGQI PYTTMAFKKW VNTAINNASG
ATLSDQHMVK IRYADLLLMY AEAMFESGQG ADLRALKALN DVRGRQGVNM PAKPALTREI
IRNERRVELA FEGLRYNDLI RWKIAAQVIP LVPYDAKGTK RKFKSYLFPI PLGQMDIMRN
VWTQNPDFL
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