| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2573 |
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| Symbol | ispD |
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| ID | 8253680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2999740 |
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| End bp | 3000417 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644936223 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_003092839 |
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| Protein GI | 255532467 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.767418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGTATT ATGCAATTAT AGTAGCCGGA GGTTCAGGGA ACAGGATGCA AAGTACTGTT
GCCAAACAAT TTTTATTGCT GGATGGCAAA CCGGTGCTCA TGCATACACT TACAGCTTTT
GATCAATGCA AATACAGACC CGAAATATTA CTGGTACTGA ATATACATCA GCACAGCTAT
TGGGAAGAAC TTTGTCTGAA GTATAATTTT GATATCCCGC ACAAGGTAGT AAGTGGTGGT
GAGCAACGGT TCCACTCTGT AAAAAACGGG TTAAAAATTA TCAAAGGAAA TGGAATAGTG
GCCGTCCATG ATGCTGCCAG ACCCTTGGTT TCGGCTGCGC TGATTAACAG GTCATATGAC
GTTGCCGAAG AAAAAGGTAA TTGTGTAGCA GGCATAACAC CAACAGATTC GGTTAGAAAA
ATTCTGGAAG AAGGAAATGA ATCATTAAAC AGAAATGAGC TGGCATTGAT ACAAACACCA
CAAACATTTC AGGTGAGTAC GCTTAGAAAA GCTTATCAGG TTCCATTTAG AAATGATTTT
ACTGATGATG CTTCTGTAGT TGAGTTTGCT GGTTTTAAAA TAAACCTGAT TGATGGTGAG
CGAGAGAACA TAAAGATTAC CTATCCGGAA GATCTGGAAA TCGCAACGAT CTTTATAAAG
AAAAGGGAAC TTAGTTAG
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| Protein sequence | MKYYAIIVAG GSGNRMQSTV AKQFLLLDGK PVLMHTLTAF DQCKYRPEIL LVLNIHQHSY
WEELCLKYNF DIPHKVVSGG EQRFHSVKNG LKIIKGNGIV AVHDAARPLV SAALINRSYD
VAEEKGNCVA GITPTDSVRK ILEEGNESLN RNELALIQTP QTFQVSTLRK AYQVPFRNDF
TDDASVVEFA GFKINLIDGE RENIKITYPE DLEIATIFIK KRELS
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