Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2562 |
Symbol | |
ID | 8253669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2986750 |
End bp | 2988357 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644936212 |
Product | ATP dependent DNA ligase |
Protein accession | YP_003092828 |
Protein GI | 255532456 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGTT TCACTAAACT CATACAACAG CTGGAAATGA GCAATAAGAC CAACGACAAA ATTGCCGCGC TGGTTGACTA TTTTAATGAA GCTGATGAAC TGGATAAACC TTATGTAATT GCCATGTTTA CCGGAAAAAG ACCTAAAAGA CCGGTAAGCA CCGCCTTGAT CAGGCAATGG GCCACAGCAT TGAGCGGAAT TCCGGAATGG CTTTTTTCAG AGTGTTACCA CAATGTGGGC GACCTGAGTG AGACCATTGC CCTGGTGCTC CCGCCTGCAT CGGAACTTAG CACAAGGAAA CTCCATGAAT GGATCAATGA GCTGGCTTTA CTGAACGGCA AAGATGATGA CGATAAAAAA ACTTTCATTT TAAAAGCCTG GGATAGCCTG GAAACACAGG AACGTTTCAT TTTTAACAAA CTGATATCTG GCAATTTCAG AATAGGTGTA TCCGGCAAAA TGCTGGTCAA TGCACTGGCC AGACAAACCG GTACAGAAAG CAGTAAAATC ATGCACAGCA TTATGGGCAA ATGGGAACCC TCGCAGATCA GTTACCAGGA CCTGATGGCA GGGGCTCATG TGAATACCGA CAGCTCCTGG CCCTACCCTT TTTGCCTGGC ATATGCGCTT GAAGCGGAAC CAGGTGCACT GGGCGAACCT TTGGAATGGC AGGCAGAATG GAAATGGGAT GGCATACGCG GACAAATTGT AAAACGCAAT GGCGAGCTTT TTATCTGGTC GCGGGGCGAG GAGCTGGTAA CTGAGCAATT CCCGGAGCTG CACTTTTTAA AAGATGAGCT GGAGGATGGA ACAGTACTGG ATGGAGAAAT ACTTTCTGTA AAAGATGGAA AAGTACAGGC ATTTAGCTTG CTGCAACAAA GGCTAAACAG AAAAACCATC AGTAAGGCCC AGCTAAGCGA CGCCCCGATA GGATTCTTTA CATACGACCT TTTGGAGCAT AAGGGAAGAG ATTTAAGATC AGATGCCTTA AGTCTGCGCC GGGAACTGCT GACAAAAACT ATTGAAGATC TGCTCACTAA ACATGTAGTG CTCCTGTCGC CGGTTATTGA ATTTAAAAGC TGGGCGCAAC TGGCAAAACT CAGAACCATA TCGAGGGATA TCAACCGTGA AGGCATCATG TTAAAAAAAA TGGATTCCTT ATACCACAGT GGCAGGAAGC GCGGCGACTG GTGGAAATGG AAAATAAACC CTTATACAGT GGATACTGTA ATGATCTACG CCCAGAAAGG CAGTGGCCGC AGGGCCAGCT TTTTTACCGA TTATACTTTT GCTGTCCGCG ATGGGGAAAA ACTGGTTACG GTAGCAAAAG CTTATTCCGG ATTAACAGAC AAAGAAATTA AAGAAGTAAA CGCTTTTGTT GTAAAAAATG CAATTGAAAA ATTTGGCCCG GTAAGAACTG TTAGACCGGA ACTGGTATTT GAAATTGCAT TTGAAGGAAT AGCAGAAAGC AAAAGGCACA AAGCAGGTCT GGCCCTCAGG TTTCCGCGTA TTGCCCGATG GAGAAAGGAC AAGAAAGCAG ATGAGATCAA TACCCTTGAT GATTTAAAGC AATTGCTTCA GGCTACATTA TTGCCTGCCA AAGCTTAA
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Protein sequence | MKRFTKLIQQ LEMSNKTNDK IAALVDYFNE ADELDKPYVI AMFTGKRPKR PVSTALIRQW ATALSGIPEW LFSECYHNVG DLSETIALVL PPASELSTRK LHEWINELAL LNGKDDDDKK TFILKAWDSL ETQERFIFNK LISGNFRIGV SGKMLVNALA RQTGTESSKI MHSIMGKWEP SQISYQDLMA GAHVNTDSSW PYPFCLAYAL EAEPGALGEP LEWQAEWKWD GIRGQIVKRN GELFIWSRGE ELVTEQFPEL HFLKDELEDG TVLDGEILSV KDGKVQAFSL LQQRLNRKTI SKAQLSDAPI GFFTYDLLEH KGRDLRSDAL SLRRELLTKT IEDLLTKHVV LLSPVIEFKS WAQLAKLRTI SRDINREGIM LKKMDSLYHS GRKRGDWWKW KINPYTVDTV MIYAQKGSGR RASFFTDYTF AVRDGEKLVT VAKAYSGLTD KEIKEVNAFV VKNAIEKFGP VRTVRPELVF EIAFEGIAES KRHKAGLALR FPRIARWRKD KKADEINTLD DLKQLLQATL LPAKA
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