Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2314 |
Symbol | |
ID | 8253420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2692991 |
End bp | 2693878 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644935963 |
Product | SMP-30/Gluconolaconase/LRE domain protein |
Protein accession | YP_003092580 |
Protein GI | 255532208 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3386] Gluconolactonase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.122885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0745328 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACCAC CTTTTCAAAT AGATATAGTT TCAAAGCATA GGTGCCAGCT GGGAGAATGT CCTGTTTGGG ATGTGAAGAA ACAAGTAATT TGTTGGATAG ATATCCTTAG GGGAGAAATC CATCAATATA GCCCAGTAGA TAGCACACAT GTCAAACTGG CTGTACCTCC ATTGACCGGA TCAATGGCGC TTTGTAAAGA TGGAAATTTT ATAGCGGCGC TAAGAAGTGG AATAAGTTTT ATCGACAGGA AAACCGCTGA GATAAAATTC ATTTCAAATC CGGAAACTCA CTTACCTTTT AATCGGTTTA ATGAGGGGAA ATGTGACCCA GAAGGAAGGT TTTGGGTTGG AACCATGTCG CTTACAGATG AGGAGAAAAA AGGCAGCGTG TATGCACTGG ACGAAAAATT AAAGATAGAT AAAAAAATCA CAGAGGTTTC TATATCCAAC GGTCTGGCTT GGAGCGGTGA TAAAAAGACA TTGTACTACA TTGATACGCC TACTTTCGAA ATCGTTTCTT ATGATTATGA TAGCAGTACA GGCACTATAA CGAATAGGAA AGTGGTGATC AAAGTTTCGG AAAAAGATGG ATACCCTGAT GGAATGACCA TTGACAATGA AGGTATGCTT TGGGTAGCGC ATTGGGATGG ATGGCAAATA ACACGTTGGG ATCCTATAAA TGGTGAAAAA TTGTTGAGCA TTCCTATGCC GGTTGCCAGA GTAACTTCAT GCACCTTTGG TGGTAAAAAT CTAAATGATT TATATGTTAC TTCAGCAAGA ACCGGGCTCA GCACATCTGA TTTAAAAAAA CAACCCGAGG CTGGGGCCAT TTTTGTAATC AGGAATAGTT CTTTCAAAGG CTTACCTGCT ATTGAATTTA ACTATTAA
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Protein sequence | MRPPFQIDIV SKHRCQLGEC PVWDVKKQVI CWIDILRGEI HQYSPVDSTH VKLAVPPLTG SMALCKDGNF IAALRSGISF IDRKTAEIKF ISNPETHLPF NRFNEGKCDP EGRFWVGTMS LTDEEKKGSV YALDEKLKID KKITEVSISN GLAWSGDKKT LYYIDTPTFE IVSYDYDSST GTITNRKVVI KVSEKDGYPD GMTIDNEGML WVAHWDGWQI TRWDPINGEK LLSIPMPVAR VTSCTFGGKN LNDLYVTSAR TGLSTSDLKK QPEAGAIFVI RNSSFKGLPA IEFNY
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