Gene Phep_2314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2314 
Symbol 
ID8253420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp2692991 
End bp2693878 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content40% 
IMG OID644935963 
ProductSMP-30/Gluconolaconase/LRE domain protein 
Protein accessionYP_003092580 
Protein GI255532208 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3386] Gluconolactonase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.122885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0745328 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACCAC CTTTTCAAAT AGATATAGTT TCAAAGCATA GGTGCCAGCT GGGAGAATGT 
CCTGTTTGGG ATGTGAAGAA ACAAGTAATT TGTTGGATAG ATATCCTTAG GGGAGAAATC
CATCAATATA GCCCAGTAGA TAGCACACAT GTCAAACTGG CTGTACCTCC ATTGACCGGA
TCAATGGCGC TTTGTAAAGA TGGAAATTTT ATAGCGGCGC TAAGAAGTGG AATAAGTTTT
ATCGACAGGA AAACCGCTGA GATAAAATTC ATTTCAAATC CGGAAACTCA CTTACCTTTT
AATCGGTTTA ATGAGGGGAA ATGTGACCCA GAAGGAAGGT TTTGGGTTGG AACCATGTCG
CTTACAGATG AGGAGAAAAA AGGCAGCGTG TATGCACTGG ACGAAAAATT AAAGATAGAT
AAAAAAATCA CAGAGGTTTC TATATCCAAC GGTCTGGCTT GGAGCGGTGA TAAAAAGACA
TTGTACTACA TTGATACGCC TACTTTCGAA ATCGTTTCTT ATGATTATGA TAGCAGTACA
GGCACTATAA CGAATAGGAA AGTGGTGATC AAAGTTTCGG AAAAAGATGG ATACCCTGAT
GGAATGACCA TTGACAATGA AGGTATGCTT TGGGTAGCGC ATTGGGATGG ATGGCAAATA
ACACGTTGGG ATCCTATAAA TGGTGAAAAA TTGTTGAGCA TTCCTATGCC GGTTGCCAGA
GTAACTTCAT GCACCTTTGG TGGTAAAAAT CTAAATGATT TATATGTTAC TTCAGCAAGA
ACCGGGCTCA GCACATCTGA TTTAAAAAAA CAACCCGAGG CTGGGGCCAT TTTTGTAATC
AGGAATAGTT CTTTCAAAGG CTTACCTGCT ATTGAATTTA ACTATTAA
 
Protein sequence
MRPPFQIDIV SKHRCQLGEC PVWDVKKQVI CWIDILRGEI HQYSPVDSTH VKLAVPPLTG 
SMALCKDGNF IAALRSGISF IDRKTAEIKF ISNPETHLPF NRFNEGKCDP EGRFWVGTMS
LTDEEKKGSV YALDEKLKID KKITEVSISN GLAWSGDKKT LYYIDTPTFE IVSYDYDSST
GTITNRKVVI KVSEKDGYPD GMTIDNEGML WVAHWDGWQI TRWDPINGEK LLSIPMPVAR
VTSCTFGGKN LNDLYVTSAR TGLSTSDLKK QPEAGAIFVI RNSSFKGLPA IEFNY