| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2276 |
|---|
| Symbol | |
|---|
| ID | 8253382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2644423 |
|---|
| End bp | 2644953 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644935925 |
|---|
| Product | isopentenyl-diphosphate delta-isomerase, type 1 |
|---|
| Protein accession | YP_003092542 |
|---|
| Protein GI | 255532170 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
|---|
| TIGRFAM ID | [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00103129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA AAGTAATATT GGTTAATGAA AATGACCTCG AAATAGGATT GATGGAAAAA
ATGGAGGCAC ACCTGCAAGG CTGCCTGCAT CGTGCTTTTT CTGTTTTTAT TTTTAATACC
AAAGGAGAAT TGTTGTTGCA ACAGCGGGCC AATGATAAAT ACCATTCAGG TGGTAAATGG
ACAAATACCT GTTGCAGTCA CCCCCGACAT GGAGAAACTA CTATTGATGC AGCCAACAGG
CGACTGCAGG AAGAAATGGG GATGCATTGT AACCTTATTT ACGGTTTTCA CTTTATCTAT
AAAGCGGCCT TATCAGATGA AATTTATGAA CATGAATATG ATCATGTTTT TTTTGGCCTA
AGCGACAGTA TACCAGTTCC CAATCCTGCT GAAGTAGCAG CGTATAAATA TTTGGAAATG
AAGGTATTGT TAAATGATCT GCAGGCCCAT CCCGAAGAAT ATACAGAATG GTTGAAGATC
TGTTTTGGTC GTGTGATGGA AACTTATCGG GAAATTCTTG ATAATATGTA A
|
|---|
| Protein sequence | MTEKVILVNE NDLEIGLMEK MEAHLQGCLH RAFSVFIFNT KGELLLQQRA NDKYHSGGKW
TNTCCSHPRH GETTIDAANR RLQEEMGMHC NLIYGFHFIY KAALSDEIYE HEYDHVFFGL
SDSIPVPNPA EVAAYKYLEM KVLLNDLQAH PEEYTEWLKI CFGRVMETYR EILDNM
|
|---|
| |