| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2038 |
|---|
| Symbol | |
|---|
| ID | 8253142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2355589 |
|---|
| End bp | 2357766 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644935686 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003092305 |
|---|
| Protein GI | 255531933 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.302869 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00293045 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA AAATGCGAAT TACATTATTG CTGACCGGCG CATTGCTTAC AGTCGGCATT
GTGCAATCGG GCTATAAGCC CTGGGAAGAA GGCATGTTCC CCCTAAGCGA AATCCATAAA
CTGGATCTAA AAAAAGCTGG CTTAAAGATC AGTCAGAATG AAATCTACAA TCCAAATGGC
ACCAGTCTGG TTGATGCATT GGTCAATGTT GGTGGCTGTA CCGGCTCATT TATATCTGAT
GCAGGACTGA TCATCACCAA TCACCATTGT GCTTTTAGTG CCGTGCAGCA GGCCAGCACA
CCTAAACACG ATTACCTGAG CAATGGTTTT GTAGCACAAA CAGCTGAACA GGAAATTGAG
GCAAAGGGAC TAACCTGTCG AATTACTGAC AGTTATGAGG ATGTGTCTGA TCGTATTTTA
GGGGCAGTAT CACAGGTTAC CGACCCTGCT TCAAGGTTAA AACTGATTAA CGATGCCATG
AAAAACATTG AAGTTGAGGC CGAGAAAAAA GACCCGGGCA TAAAAGCCGA AGTATCGGAA
ATGTTTATCG GAAAAACTTA TGTATTGTTC AGGTATAAAA CCATAAAGGA TGTGCGGCTG
GTTTATGTGC CCAACCGGCA GATCGGTGAA TATGGTGGAG AAACCGACAA CTGGGCATGG
CCACGTCATA CGGGCGACTT CTCTTTCATG CGTGCTTATG TGGCACCAGA TGGTTCTCCG
GCCAAATACG CAAAAAACAA CGTTCCCTAC AAGCCAAAAA AATTCCTGAA AGTAAACCCC
AACGGAACCA ACGAGGAAGA CTTTGTATTC ATTCTGGGCT ATCCGGGCAA AACTTTCCGC
CACCGCCCTG CCCAGTTCAT TGCCTATCAG CAGCAATTTG TATTGCCCTA CGTTTCGGAC
CTATATGATT TCCAGAATAC CACTATGGAA AATGCCGGCA AAAAAGATAA AGCGACCGAA
ATTAAACTGG CAACCAGGAT TAAGAGAAAC GCCAATGTAA TGAAAAACTA CAGAGGTAAA
TTACAGGGCC TAAAGGGCAT CGACCTGGTT GGCAAAAAGA AAGCGGAGGA TGCGGAGCTT
GCCCGGTTCA TTAACAATAA TGTGGAAGTA AAAGCCAGGT ATGGCACTTT AATGACCGAC
ATTGACAACC TGTACAAACT AATTAACGGA GATGCCAAGC GGGATTTATG GCTTACCCAG
CTTTACAACT CAACCAGTTT ACTGGGTGTA TCCAAAAACA TCAATATATT CAAAGCAGAT
CTTGAAGCTC AGCCGGCAAA CCAGCAGGAA GCTTTCTTTA AACAGAACCT GCCACGCTTA
AAAGAGTTTC TGTCTGGAAA TTATGCTTCA TATGATATTG AGGCCGACAA AAACATCTTT
AAAAAGATGC TGACTGATGC TGCAGCACTC CCTTCAGACC AGCAGGTAAG TGCATTAAGC
ATGTTAAACC TTACTTCCGA TAGTGAAAAA GAGATTAACC GTTTTATCGA TAAAACATTT
AACATCAGCA AATTGAAAGA TAGTGCTTAT GTGTTCCATA CTTTATTGGC AAGCCCTGGT
TCGCTTACTG CATACAGCGA TCCTCTACTG GTTTTTGAAA AAGCAATAGC CCGGCAGATA
GCCGAACTGA AACCAGAGAA AGACCGCCGG GAAGGCATAT TGAATAAGCT GATGGGCGAT
TATGTGAATG TTAAAGAAAA ATTCCTGAAG AAAGACTTTA TCCCCGACGC GAACAGTACT
TTAAGGCTGA CTTATGGCTA TGTTAGGGGA TACTGGCCGG CAGACGCATC ATATATGCGC
CCATACACGA CTATAAAGGG CATACTGGAG AAAGGGACAA CCGGAAATCC GGAATTTGAT
TACCCGGCAC AGATCAGGGC ATTGTGGGAG GCCAAAGACT TTGGGCCTTT TGCCAAAAAA
GACCTTAAAG ATGTACCTGT AGCTTTTCTT TATAATATGG ACACTACCGG GGGCAACTCT
GGCTCCCCTA TTATGAATGA CCGCGGTGAA TTGATCGGTG TAAATTTTGA CCGTGCTTAC
GGTGCTACGA TTAATGATTA TGCCTGGAAC GAAAGTTATA GCAGGTCTAT AGGGGTCGAC
ATCCGTTATG TGTTATGGGT AGCCGCTAAA ATTGACCATG CCAACTTTCT TTTAAAAGAG
ATCGGCGTTA AAATATAA
|
|---|
| Protein sequence | MNKKMRITLL LTGALLTVGI VQSGYKPWEE GMFPLSEIHK LDLKKAGLKI SQNEIYNPNG
TSLVDALVNV GGCTGSFISD AGLIITNHHC AFSAVQQAST PKHDYLSNGF VAQTAEQEIE
AKGLTCRITD SYEDVSDRIL GAVSQVTDPA SRLKLINDAM KNIEVEAEKK DPGIKAEVSE
MFIGKTYVLF RYKTIKDVRL VYVPNRQIGE YGGETDNWAW PRHTGDFSFM RAYVAPDGSP
AKYAKNNVPY KPKKFLKVNP NGTNEEDFVF ILGYPGKTFR HRPAQFIAYQ QQFVLPYVSD
LYDFQNTTME NAGKKDKATE IKLATRIKRN ANVMKNYRGK LQGLKGIDLV GKKKAEDAEL
ARFINNNVEV KARYGTLMTD IDNLYKLING DAKRDLWLTQ LYNSTSLLGV SKNINIFKAD
LEAQPANQQE AFFKQNLPRL KEFLSGNYAS YDIEADKNIF KKMLTDAAAL PSDQQVSALS
MLNLTSDSEK EINRFIDKTF NISKLKDSAY VFHTLLASPG SLTAYSDPLL VFEKAIARQI
AELKPEKDRR EGILNKLMGD YVNVKEKFLK KDFIPDANST LRLTYGYVRG YWPADASYMR
PYTTIKGILE KGTTGNPEFD YPAQIRALWE AKDFGPFAKK DLKDVPVAFL YNMDTTGGNS
GSPIMNDRGE LIGVNFDRAY GATINDYAWN ESYSRSIGVD IRYVLWVAAK IDHANFLLKE
IGVKI
|
|---|
| |