Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2022 |
Symbol | |
ID | 8253126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2329865 |
End bp | 2331682 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644935670 |
Product | ABC transporter related |
Protein accession | YP_003092289 |
Protein GI | 255531917 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0029505 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTAAAT CATTTGCAAC AAAAGCTCAT AAACTAAGTA CGAATCTAAA TCTATTAAGA ATAATAAGGT TAATATGGTC TGCAACTAAA TTATGGACTA CGATTTCCAT AATTTTCATA ATGGTGGAAA GCGCACTTTT CTTTGCCTCT CTTTATTTAC TGAAGCTATT GATTGACACC CTTGCTAAAA AAGAGGCCAA CCTGGTTCAA TATGAAGACC GCGTCATTAA TCTCATCATT TTCGCTACCC TTGCTGCCGT TCTTTGTGCC GCTGCAAAAG CCATACTAGG TTATATAACT GAAAAGCAAT CGGGAAAAGT AGCTGAATAC GTTGACAATA AAATCCATGA AAGCGCCATT AATCTTGATT TGTCCTTCTA TGAAAGTCCT GAATACTTTG ACATTTTAAA GCGCGCGCGG GATATGGGAG GCGACAGGCC TAATTTGATC GTCTTTACTA TTGTTGACAT CACTAAAAAC TTTATCAACC TGATCATCAT AGGCTCTATA CTGGTTTCTA TAGACTGGCG CCTCTTTCCA ATCCTGACCT TATTTGTACT CCCAACTTTA TGGGTTAGGA TTATCTTTGC AGACAGCCAA AATGTGCTTC GGATAACCCA GACGGCGCTA GAAAGAAAAA CAAACTATTT GAGTACATTA TTAACCAGCG ATGTTCACGC AAAAGAAGTC AGAAGCTTCG GTTTGGGCGA GTATTTAAGA AAAATGTATA GTGAAATCAG ATTGTTATTA TTGTCAGGAA AGCTCAAACT AAGTAAAGAA CGTACATACC GGGAATTGGT AACCTCTGCA ATTGCTACAC TTGGTTTTTT CTCGTGTATT GCTTATATCG CTATTGGAAG TGTCCGGGGA AATACCAGCG TGGGGGATAT TACTTTATTT TTAGTTGCTT TTCCACAATC TTTCAATGTT ATACAGACCT TGTCCTCTGG TATATCTACC CTCTATCAGA ATAATATCTT TGTCAAGAGC GTATTTGAGC TATTTGATTT AAAAAGCAAT TTAGTGCAAG CACAGCATCC ATTGCCAATA CCAAATGATG CATCCATCGA TCTCGAAATA AAAGATTTAA ACTTCATCTA CCCTCACGCA GAAAAGCCGA CACTCACAGA CATCAATATC AAAATGCCTT CCGGAAAAAT TATAGCTGTT GTAGGAATGA ATGGAGCAGG TAAATCTACC CTGATTAAGC TGTTATGTAG ATTATATGAT CCAACGTCAG GAACAATTAG TTTAAGTGGC ACAGACATCA GGAAATATTC AATTAAAGAA TATCAAAAAC AAATTTGTGC GGTCTTTCAG GATTTTGGAA AATACAACGT AAGCGCTGCA GATAACATCA GGTTTGGAGA TATTGATGGC AAAAGAGACA GAATAGAAAT TATCGAAGCA GCAAAAAATT CAGGTGCAGA TTCGTTTATC GATACATTTC CTGCCAGGTA TGATACGATT ATGGGTCGAA TATTTGAAGA TGGTCACGAA GTAAGCATAG GTCAATGGCA GAAACTGGCC ATTGCCAGGT CATTTTATAG CAAGTCACGC TTTATTATCT TAGATGAAGC CACCAGTGCC TTAGATGCGA CAGCAGAAAA GGAACTTTTT GATTCTTTCA GAGAACGTAT CGGGACTCGT TCTGCGCTCA TCATCAGTCA CAGGCAATCT GCAGTAAAAC ATGCAGACTA TATCTATTTC CTATCCAATG GAACTATATC AGAATCAGGA ACCCACCAGG AATTAATCAA CTTGAAAGGA GCCTATTATA ATTTGTTCAA TAAAGATTTA GCACAGAAAC AACAATGA
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Protein sequence | MIKSFATKAH KLSTNLNLLR IIRLIWSATK LWTTISIIFI MVESALFFAS LYLLKLLIDT LAKKEANLVQ YEDRVINLII FATLAAVLCA AAKAILGYIT EKQSGKVAEY VDNKIHESAI NLDLSFYESP EYFDILKRAR DMGGDRPNLI VFTIVDITKN FINLIIIGSI LVSIDWRLFP ILTLFVLPTL WVRIIFADSQ NVLRITQTAL ERKTNYLSTL LTSDVHAKEV RSFGLGEYLR KMYSEIRLLL LSGKLKLSKE RTYRELVTSA IATLGFFSCI AYIAIGSVRG NTSVGDITLF LVAFPQSFNV IQTLSSGIST LYQNNIFVKS VFELFDLKSN LVQAQHPLPI PNDASIDLEI KDLNFIYPHA EKPTLTDINI KMPSGKIIAV VGMNGAGKST LIKLLCRLYD PTSGTISLSG TDIRKYSIKE YQKQICAVFQ DFGKYNVSAA DNIRFGDIDG KRDRIEIIEA AKNSGADSFI DTFPARYDTI MGRIFEDGHE VSIGQWQKLA IARSFYSKSR FIILDEATSA LDATAEKELF DSFRERIGTR SALIISHRQS AVKHADYIYF LSNGTISESG THQELINLKG AYYNLFNKDL AQKQQ
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