| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1950 |
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| Symbol | |
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| ID | 8253054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2249297 |
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| End bp | 2252836 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644935601 |
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| Product | PAS sensor protein |
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| Protein accession | YP_003092220 |
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| Protein GI | 255531848 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.488377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000911769 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATACA CACCTCTTCC CGAAAATGAG AAAGAACGAT TAAGGGTATT ACACAACTCT
CAGGTATTTG ACCCGGCGTA CGAGGCGCAT TTTGAACGCA TCACAGAATT AGCAGCCTCC
ACATGCGATA TACCAATCGC ATTTATTACC TTGATTGACC AAAATAAACA ATGGTACAGA
TCAAATAAAA TCTTCACTAG TGATGAAATT GCCATAGAAA ATGAATTTTA TCGTCAAACA
ATAAATTCTG CCGGAATTCT CGAAGTACTG GATCCTGGGG AGGATATCCG GTTTATATCC
AATGCAAACC ATCAGTACAT TAAAATCAGT TATTATGCAG GCATTCCCCT GATTGATTCG
AGTGGGAATA TTATAGGCAC TTTATCTTTA TTTGATACCA AACCCAAAAA TGAACTTACT
TCCAAGCAAA AAAGAATAAT TGAACTGCTT TCTATTGAAG TCATTTCTTT AGTAAATGAA
ATTAAGAGTA AAAAAGAACT TAACCATTTT TTAAAACTCT ACAAATCTTC CCACGACCTA
ATCTGCGAGG CTGATATTGA TGGTTTTTTA AAACGGGTAA ACCCTGCTTT TACAAATACT
CTCGGATGGC AGGAACAAGA CTTGCTCAAT AATTCTTTTT ATAGTTTTAT TCATCCTTAT
GATTTACAAC CCACAAGCGA TGAATTAAAA AAATTAAGCG ATGGAAAAAA TGCTGTAAAC
TTCAGCAATC GCTTTAAAAC AAAAAAAGGA GAATACAGAA CCTTACAATG GAGTGTCACC
ACGGAAACGG ATTCTCAGAA AATACTGGCA ATTGCAAGAG ATGTTACTAA AGATAAAAAT
CTTCAGCAAA AAATTCTAAC CAGCGAGAGC AGATTAAAAT CATTTATCGA AAATGCACAG
GGTTTAATGT TTACCCATGA TTTATCAGGT AATCTTTTAT TTATCAATAA CGCCGGGGCC
CATTATTTAG GCTACACAAA ACAGGAAATG CAGAGCATGG GCCTGTTCGA CCTTATCCCT
AAAGACCACC ATGCTGCACT TAACGATTAC CTAAGAGAAA TTAAAAATAA GGGTAAAGCC
CAGGGGCTAA TGACTACTGT ACACAAAAAA GGTAACCATA TCATATGGAT ATTCAACTGT
GTGCTGGAAA ATAATGCGAC AAACAAGCCT TATGTTATCT GTAATTCAAT TGACATCACG
GAGCGGCATA ACCTGGTAAA AGAATTAAGG ACCAGGAATA AAAAACTTGA ACTGGCCAAT
GACATTGCCC GACTTGGAAA CTGGGAACTA AACCTGGTTG AACAAAAACT GACCTGGTCT
GAAGTTACCC GTCAGATATT TGAAGTAGGA CATGACTTTG AACCAAGTTT GGAAAGCGAG
CTGTTGTACT ATAAACCAGG AACTACCAGG GAAAATAGGT TCAATGCACT TAATGCAGCT
GTACTTCATG GAAAAAGCTG GGACCTGGAA TTAGAACTGC TCACCGCTAA GGGAAACGCA
ATCTGGATCA GATCAATCGG AGTTCCAGAA TTCCTGGAAG GACGCTGTTA TAAAATATCT
GGCACCATTC AGGACATCAC CAAAATTAAG CGCATGGAAG CGAACTTAAT TTCGGCAAAA
GAAGATGCAG AATCAGCCAA TAAAGCAAAA TCAGAGTTTC TGGCCAATAT GAGCCATGAA
ATCAGGACCC CATTAAATGG TATCATCGGA TTTACCGATC TGCTGATCAA AACGCAGCTC
AATGAAACCC AGCAACAATA TCTTTCTATA GTTACACAGT CAGGTAATGC CTTATTAAAT
ACCATTAATG ACATTTTAGA CTTCTCGAAA ATTGAGGCTG GCAAACTAGA GATGAACTGG
TCTAAATTCA ATCTCTATGA AATGGCAGAA GAATCTGCCG ATGTTATAAA ATACCAGGTA
CAAAGTAAGG GCCTTGAAAT GTTGTTGAAT ATTTCGGCCG ATCTGCCCAA ATATATCTGG
GCTGACGAAC TCAGACTTAA ACAGATCCTG ATCAATTTAT TAGGAAATGC TGTAAAATTC
ACTGAAAGCG GTGAAATTGA ACTCAAGGTA GAAGCACTGA CAAACCCTGA ACTACCTGAA
ATTAAATACC GCTTTTCTGT GAGGGACACA GGTATAGGCA TTAACCCCGA TAAAAAGCTT
AAAATATTCG ATGCATTTTC ACAGGAAGAC GCATCTACAA CAAAAAGGTA TGGGGGTACA
GGATTGGGCT TAACAATTTC AAACAAATTA TTGGGGCTAA TGAACAGTCA GCTCCAGGTT
GAAAGTGTAA TTGGTAAGGG AAGTGTATTC TATTTCGAAA TTATCCTCCA GTCTGAGCCA
GGTGAATCCA TTGAGATACA GAACCTGGAT AAGATAAAGA ATGTCCTGAT TGTTGATGAT
AACAAAAACA ACAGACTGAT CATCAATAAA ATGTTATCCC TGAAACAGAT CAGATCAGTG
GAAGCCGGAA GTGGCCATGA AGCGATAGGC ATGATCTCTA AGGGTGAAAA ATTTGATGTG
ATCCTGATGG ATTACCACAT GCCTGATCTG GATGGACTGG AAACTATAAA AAAGATAAGG
GAGATCCTGA AAGATTCAGA TAAAGACCAA CCTATTGTTT TGTTGCACAG TTCATCAGAC
GAAACAATTA TAAAGGCCTG TGAAGAACTG AATGTACATC ATCGTTTGTT AAAACCGATC
AAGCTTAAGG ATATGTACAG CTCACTTTTC AGGGTAATTT CTAAGAAAAC TGAAAAACCG
GGTGCAGCCG TACAGGAAGC AGAGCGAATG GACGATCCGA TCCAGGTTTT AATAGCAGAA
GATAATGCGG TTAACATGTT ACTGGCCAAG ACTATTGTAA GACGAATTGC ACCAAATGCC
ACTATATTCG AGGCAAAAAA TGGTCTGGAA GCTCTTGAAC TTTATAAGAC AACCAAAATT
GATATCGTTC TGATGGATAT TCAGATGCCT GAAATGAATG GCTATGAAGC TACAAAAAAA
ATCAGGGCAG TAAGACATAA ACCCCATACC CCTATAATTG CATTAACTGC CGGAAATGTT
AAGGGAGAAA AAGAGAAATG CTTTGCGGCA GGTATGGATG ATTTTATATC CAAACCCGTA
GTAGCTCATA CCATTGCGCT TTCCCTGAAA AAATGGCTTA AGAACCCTAC AGAAGACCCA
CATAGTGATC TATCCCTATC GCCATCCGAC GATTCAGATT ACCACTTCAA TATAGAGTTG
CTAAAAGAAT ATGTAGGTGA TGATGAAACT GTTTTAACAA AAGTACTGGC ACTCCTCAGA
ACCGAACTGA TGAATTTCTC CAAAGAATTT AAGGAGCATA CGTCAGTTAG AAACCTCAAT
AAGGTAAAGG AACTGGGTCA AAAAGTTTAC GATACCGCAA TAGTTTCCGG TTTAACTGCA
CTTGCCGTTA TTGCAAAAAA AGTAGCTTCC GTTACTACTT ACGATGAAAC CGAAATTAAC
CAGTTGTTGG CAGAGGCCCA ACAGGAAATC AAAACAGCAA TAAGCTTAAT TGTCAGATAA
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| Protein sequence | MKYTPLPENE KERLRVLHNS QVFDPAYEAH FERITELAAS TCDIPIAFIT LIDQNKQWYR
SNKIFTSDEI AIENEFYRQT INSAGILEVL DPGEDIRFIS NANHQYIKIS YYAGIPLIDS
SGNIIGTLSL FDTKPKNELT SKQKRIIELL SIEVISLVNE IKSKKELNHF LKLYKSSHDL
ICEADIDGFL KRVNPAFTNT LGWQEQDLLN NSFYSFIHPY DLQPTSDELK KLSDGKNAVN
FSNRFKTKKG EYRTLQWSVT TETDSQKILA IARDVTKDKN LQQKILTSES RLKSFIENAQ
GLMFTHDLSG NLLFINNAGA HYLGYTKQEM QSMGLFDLIP KDHHAALNDY LREIKNKGKA
QGLMTTVHKK GNHIIWIFNC VLENNATNKP YVICNSIDIT ERHNLVKELR TRNKKLELAN
DIARLGNWEL NLVEQKLTWS EVTRQIFEVG HDFEPSLESE LLYYKPGTTR ENRFNALNAA
VLHGKSWDLE LELLTAKGNA IWIRSIGVPE FLEGRCYKIS GTIQDITKIK RMEANLISAK
EDAESANKAK SEFLANMSHE IRTPLNGIIG FTDLLIKTQL NETQQQYLSI VTQSGNALLN
TINDILDFSK IEAGKLEMNW SKFNLYEMAE ESADVIKYQV QSKGLEMLLN ISADLPKYIW
ADELRLKQIL INLLGNAVKF TESGEIELKV EALTNPELPE IKYRFSVRDT GIGINPDKKL
KIFDAFSQED ASTTKRYGGT GLGLTISNKL LGLMNSQLQV ESVIGKGSVF YFEIILQSEP
GESIEIQNLD KIKNVLIVDD NKNNRLIINK MLSLKQIRSV EAGSGHEAIG MISKGEKFDV
ILMDYHMPDL DGLETIKKIR EILKDSDKDQ PIVLLHSSSD ETIIKACEEL NVHHRLLKPI
KLKDMYSSLF RVISKKTEKP GAAVQEAERM DDPIQVLIAE DNAVNMLLAK TIVRRIAPNA
TIFEAKNGLE ALELYKTTKI DIVLMDIQMP EMNGYEATKK IRAVRHKPHT PIIALTAGNV
KGEKEKCFAA GMDDFISKPV VAHTIALSLK KWLKNPTEDP HSDLSLSPSD DSDYHFNIEL
LKEYVGDDET VLTKVLALLR TELMNFSKEF KEHTSVRNLN KVKELGQKVY DTAIVSGLTA
LAVIAKKVAS VTTYDETEIN QLLAEAQQEI KTAISLIVR
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