Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1927 |
Symbol | |
ID | 8253031 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2229276 |
End bp | 2230448 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644935578 |
Product | ABC-2 type transporter |
Protein accession | YP_003092197 |
Protein GI | 255531825 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.751197 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0397267 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGGC CGCATAAACC ATCTTTAATC CAGCTCTTTT TAAGAGAGGT TACCTTGGTG GCAAAGGACC ATAGTTTATT GCTTACACTA TTGATTGCAC CTTTGCTGTA CGCTTTTTTT TATGGCAGTA TTTATATCAA TAAAGAAGAA GAGCAGGTAA AACTGGCTGT GGTAGACGAC GACCAGTCGA GATTGTCCCG CCTGCTGCAA CAGCAGATAA ACAATTCGCA GCTGGTGGAA CTGATCCATT TTTCTGACCT GGAAACTGCA AAAGAACAGA TGTACAGCGG TAACTGTCAG GGTTATTTTT ATATTCCCAG GGGTACACAA AGTAATTTGC TGACACTTAA ACAAAGTAAT GTAGTACTTG CGGTAAATGC GGCAAGATTT CTGCCTTCCA GTGATTTATT AATGAGTGTG CAGCAGATTT GCCTTACTGT AGGAGCGGGG ATAAGGCTGC AGTATTTTGA AAAGAGTGAA GGCTTAAGCA GGACTATGGC CATGCAAAAT GTAATGCCCA TTACCCTGGA TTACCGCCCG ATGTTTAATG AAAGGTCCAG TTATGGAGCT TTTCTGTTGC CTGCATTGCT GGCCCTGATC TTGCAGCAGA CACTACTGAT CGGCCTATCG GAAAGCGTTG CCGGAGAAAG GCAGCAGGGC AGTATAAAAG AATGGTTTAA GGCTGGCATT TCAACCGCAA TCTGGGGCAA AGGATTATTT TATCTTGTTG TTTTTGGCGC TTATGGCTTC TTTTTCCTGA ATGTAAACTT TAGGTTACTC AATTTGCCCA TGCGGGGCAG TGGTTTTCAA CTGGGCGTGT TGCTGCTCTT TTTGTTGTTT ACGTTGATAC CCATGGCCCA ATTTATAGGT TCTTTGTTCA GATCGCAATT GCTTTGCCTC CAGGTGATGG CCTTTTCAAC CTATCCCATT TTCCTGATTA CCGGATATAC CTGGCCTTTT GAATCACTGC CAGTGCCGAT ACAGTGGGTA TCCATGCTGC TGCCCACTAC GCCATTTATT AAAATATACA CGGCCATAGT TCAATCTGGT GCCGACTTGC TGGCCTATGC CGCTGCTTTG CTGCACCTGT TATTGCTTTG GTTGTTGTAC AGCACTGCCT GTTACATAAG GTTTAGAAAG CTGGCCCGGC AAAGCAAAGT TCATTTGGAC TGA
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Protein sequence | MSRPHKPSLI QLFLREVTLV AKDHSLLLTL LIAPLLYAFF YGSIYINKEE EQVKLAVVDD DQSRLSRLLQ QQINNSQLVE LIHFSDLETA KEQMYSGNCQ GYFYIPRGTQ SNLLTLKQSN VVLAVNAARF LPSSDLLMSV QQICLTVGAG IRLQYFEKSE GLSRTMAMQN VMPITLDYRP MFNERSSYGA FLLPALLALI LQQTLLIGLS ESVAGERQQG SIKEWFKAGI STAIWGKGLF YLVVFGAYGF FFLNVNFRLL NLPMRGSGFQ LGVLLLFLLF TLIPMAQFIG SLFRSQLLCL QVMAFSTYPI FLITGYTWPF ESLPVPIQWV SMLLPTTPFI KIYTAIVQSG ADLLAYAAAL LHLLLLWLLY STACYIRFRK LARQSKVHLD
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