Gene Phep_1811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1811 
Symbol 
ID8252914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp2110828 
End bp2112015 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content47% 
IMG OID644935462 
Productaminotransferase class V 
Protein accessionYP_003092082 
Protein GI255531710 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0520] Selenocysteine lyase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0747034 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.19699e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATAGCA TTAATATACA AGAGTTGAAC AAATACCGGG CTGATACATC GGGCTGCTCC 
TGCCTGGTAC ATTTCAACAA TGCTGGTGCT TCTTTGCCGC CCGACGTAGT GATCGATACT
GTAGTTGACT ATTTAAAAGA AGAAGCAACT TATGGTGGCT ACGAGACCGA ATATAAGAAC
ATTGCCCGTA TCGAGGGTGT TTACCAGTTG ATCGCAGACC TGATCGGCGC GAACAAAGAC
GAAGTAGCCA TTTTCGAGAA CGCGAGTGCA GCATGGGGAA CTGCTTTTAA AGGTTTGGCC
TTGGCTGATG GTGACGAGAT CATTACCTGT GAACAGGAAT ACGTTACTAA TATTGTAGGT
ATGGCTGATG CCCGGAAGAG AGGTGTTAAA GTGACTGTAA TTACCAACGA CGAACATGGC
AACTTTCCAT TGGCCGAACT TGAAAACGCG ATAACCCCGA ACACGAAGCT GATCGCAGTA
ACACACATTC CATCATCGGG TGGTGGTATC CTACCTATCA ACGATATCGG CAAAGTGGCC
AACAAACACC AGGTGCTGTA TATGATAGAT GCCTGCCAAA CAGCCGGACA ATATCCCATC
GATGTTACAG CGATTGGTTG CGATATCCTT TCAGCTACTG GCCGTAAGTA TTTGCGTGCC
CCTCGTGGTA CAGGCTTTCT GTTCGTTAAG CGAAGTGTCC AGGATAGGCT TTCACCGGTA
CTTAAGGACT TTCTTGCAGC AGGTAATGTA AGCCTGGACG GCTACAACTT GCGCAATGAT
GCCCGCCGCT TTGAATTATA CGAGAAAAGC AGGGCCTTAA CGCTGGGGTT GGGTAAAGCG
ATCGAGTATG CCCTCGCCAT CGGCTTAGAA CGTATCTGGC ACCGCGTTCA ATACCTGGCA
GATATTACCC GTTCAGCGTT GAACAGTATA CCTGGCATAA CGGTTCATGA TATGGGCAAT
GAAAAGTGCG GCATTGTTAC CTTTTCGGTC AATGGTATCG ACAGCATGTT GGTAAGGGAT
AAGCTGGTCG AGAACGGCGT CAACGTGTCT TTTGGCGGGC AACAAGCAAC ACCGATCTAT
ATGGATAAGC ACCAACTTAA GGGTATCGTA AGAGCATCAC TGCACTATTA CAATACTGAA
GCCGAGATAG CAGCCATGTG CGATCTGTTG AGGCGGATTA ATAATTAA
 
Protein sequence
MNSINIQELN KYRADTSGCS CLVHFNNAGA SLPPDVVIDT VVDYLKEEAT YGGYETEYKN 
IARIEGVYQL IADLIGANKD EVAIFENASA AWGTAFKGLA LADGDEIITC EQEYVTNIVG
MADARKRGVK VTVITNDEHG NFPLAELENA ITPNTKLIAV THIPSSGGGI LPINDIGKVA
NKHQVLYMID ACQTAGQYPI DVTAIGCDIL SATGRKYLRA PRGTGFLFVK RSVQDRLSPV
LKDFLAAGNV SLDGYNLRND ARRFELYEKS RALTLGLGKA IEYALAIGLE RIWHRVQYLA
DITRSALNSI PGITVHDMGN EKCGIVTFSV NGIDSMLVRD KLVENGVNVS FGGQQATPIY
MDKHQLKGIV RASLHYYNTE AEIAAMCDLL RRINN