Gene Phep_1678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1678 
Symbol 
ID8252780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1985087 
End bp1986088 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content43% 
IMG OID644935330 
ProductD-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 
Protein accessionYP_003091951 
Protein GI255531579 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG CATTTTTTTC TGCCAAACCT TATGACAAAA CATTTTTCAA CAGGTACAAT 
GAAGCATATG GTTTTGAGTT GGAGTTCTGG GAAACACATC TGGGGCCGCA TATCGTAAAT
GCCATCACAC CGGGCACTGA AGCTGTTTGC GTATTTGTAA ACGATAAACT TACCGGCGAA
GTGATCGATA TCATGGCGGC AAAAGGCGTT AAAATAATAG CTTTACGCTG TGCCGGCTTC
AATAATGTAG ACCTGGAAAG GGCTAAAAAA CAGGGCATCA GAATCTGCAG GGTCCCTGCA
TATTCTCCCG AAGCTGTTGC AGAACATGCC GTTGCTATGC TGCTCACCTT AAACAGAAAA
ACACACAAAG CCTATAACCG TGTACGTGAG CAAAACTTCT CGCTCAACGG TCTGCTGGGT
TTCAACCTGT ATGGTCGTAC AACAGGTGTT ATCGGAACAG GTAAAATAGG GAAAGCGTTC
ATCAAAATTA TGCTGGGCTT TGGTTGCAAA GTTTTGGCCT GCGATCTCTA TGAAGATGAA
ACATTAAAAG CTGAAGGTGT TCAGTACCTC TCTTTCGACG AGGTATTAAA CCAGTCAGAC
ATCCTGTCTC TCCATTGTCC ACTTAATGCC GAAAACCACT ACCTGATCAA TGAAAGCAGC
ATCGTTAAAA CGAAAAAAGG TGTCACCATC ATCAACACCA GTCGCGGCGG ATTACTCAAC
ACACACGATG TGATCCAGGC TTTAAAATCC GGACATATTG CTTATCTGGG AATAGATGTT
TACGAACAGG AAGAACAGCT TTTTTTCAAA GATCTTTCAG GATCTATCAT AGCAAATGAC
GAGATCCAAC GCTTAATGAG CTTTCCCAAT GTACTGGTTA CCGGTCATCA GGCTTTTTTT
ACAGAAGAAG CCCTTTCACA AATCGCCACG ATTACCTTAA ACAGTATCGA TCACCTCATT
AAAGGTTCCG CACCAGCAGA TCCGTCTGTA TTGCTCGTGT AA
 
Protein sequence
MKIAFFSAKP YDKTFFNRYN EAYGFELEFW ETHLGPHIVN AITPGTEAVC VFVNDKLTGE 
VIDIMAAKGV KIIALRCAGF NNVDLERAKK QGIRICRVPA YSPEAVAEHA VAMLLTLNRK
THKAYNRVRE QNFSLNGLLG FNLYGRTTGV IGTGKIGKAF IKIMLGFGCK VLACDLYEDE
TLKAEGVQYL SFDEVLNQSD ILSLHCPLNA ENHYLINESS IVKTKKGVTI INTSRGGLLN
THDVIQALKS GHIAYLGIDV YEQEEQLFFK DLSGSIIAND EIQRLMSFPN VLVTGHQAFF
TEEALSQIAT ITLNSIDHLI KGSAPADPSV LLV