| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1556 |
|---|
| Symbol | |
|---|
| ID | 8252658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1841788 |
|---|
| End bp | 1842465 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644935210 |
|---|
| Product | uracil-DNA glycosylase |
|---|
| Protein accession | YP_003091831 |
|---|
| Protein GI | 255531459 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0692] Uracil DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00628] uracil-DNA glycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.478183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTAG CAATAGAAGA AAGCTGGTTA AAAGTACTTA AAGATGAGTT CGAAAAACCC
TATATGAAAT CGCTTAAAGC TTTTTTACTG GAAGAAAAAC AAAAGGGATA TAAGGTATAC
CCTAAGGGTG CTGATATATT TAATGCCCTT AACCACACCC CTTTTGATAA GGTAAAAGTA
GTTATTCTGG GTCAAGATCC CTATCATGGG ACCGGCCAGG CCCATGGTTT GTCTTTTTCT
GTGCAGAAAG GGATTACCGT CCCCCCCTCC CTGAAAAATA TTTATAAGGA ACTGTCTGCC
GATATTCCTG GTTTCAGCAT TCCCAATCAC GGTAACCTAA CCCAATGGGC TGATGAAGGT
GTTTTACTCT TAAACGCAAC TTTAACTGTA AGGGCCCATG AAGCAGGTTC ACACCAGGGA
AAGGGCTGGG AAATTTTTAC TGATAAGATC ATCAGTGAGT TGTCTGAAAA AAGGACAGGC
CTGGTTTTCC TTTTATGGGG CAGATATGCA CAAAATAAAG CTGTATTGAT TGATCAGAAA
AAACATACCA TCATTGCCGC AGCACACCCC TCGCCCTTCT CGGCCTATAA CGGTTTTTTA
GATAGCAAAC CTTTTTCCAG GGCCAATGCT AAACTTATTG AACAGGGGCA AAGCCCCATT
AACTGGCAAA TCACTTAA
|
|---|
| Protein sequence | MSVAIEESWL KVLKDEFEKP YMKSLKAFLL EEKQKGYKVY PKGADIFNAL NHTPFDKVKV
VILGQDPYHG TGQAHGLSFS VQKGITVPPS LKNIYKELSA DIPGFSIPNH GNLTQWADEG
VLLLNATLTV RAHEAGSHQG KGWEIFTDKI ISELSEKRTG LVFLLWGRYA QNKAVLIDQK
KHTIIAAAHP SPFSAYNGFL DSKPFSRANA KLIEQGQSPI NWQIT
|
|---|
| |