Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1420 |
Symbol | |
ID | 8252520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 1686109 |
End bp | 1689081 |
Gene Length | 2973 bp |
Protein Length | 990 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644935073 |
Product | bifunctional preprotein translocase subunit SecD/SecF |
Protein accession | YP_003091696 |
Protein GI | 255531324 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.469149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.319601 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGGTA AAGGTTTAAT TAAATTTTTG GCAATACTTT TAGGTATTGT CTGTGTGTAT TATCTCTCGT TCAACTTTGT TACCTCTAAA GTTGAAAAAG ACGCAAAAGC TTACGCTAAA GGGGACGTAG AAAAAGAAAA AGCTTATTTA GATTCGATGG CCACCGTGCC TGTTTATCCG CTTTTTGGAT TTAATTATCA GTTCTGCAAA TCAAAAGAAA TTAAACTGGG GCTTGACCTT AAGGGCGGTA TGAACGTAAC GATGGAAATA TCGTTAGGTG AACTGGTTAA ATCTTTGGCC AGCAATACAG ATGATGTTAA TTTTAACAAA GCCCTTTCCA ATGCTCAGCA ACAATTAAAT GCTGGTGGAA AAGATTTCAT CAGTTTGTTT GTGAATGAAT ATGAAAAACT TGCGCCGGGT AAGAACCTGG TAGATTTTTT CTCTAATCAG GACAATGCAA AACTATTAAA ACCAAATGCA AGCAATAACG AAGTAAAAAG CTTTTTATCT AAAGAAGCTA CCAGTGCTAT CGACCGTTCG TTCATTATCA TCAGAAGCCG TATTGATGGT TTCGGTGTAG TAAGCCCGAA CATGCAGAAA CAGGAAGGTA CCAACCGTAT CCTTATCGAA ATGCCGGGTG TGCAGGACAA AGAGCGTGTC CATAAATTGT TACAAGGTTC TGCCGAACTA CAGTTCTGGC AGGTTTACCA GAACGAGGAA GTATATCCGG TTTTGGAAAA TATCAACAAA ACACTTGCCC TTACTTTAAA AGATACAACA ACTGCTACAG GTGCAGCTAA AGATACTACA GCAAAAAGCG GAAGTAAACT GGCAGGACTG GCTAAAAAAG CTGATGCTAA AGATTCATTA AGCTTAAAAA ACAATGAGGC AGCCAAATCT AACCCATTGT TTGCCGTATT GACACCTCCA ACCTACCAAT CGGAAAACGG TCAGCCGGCA TTACGCCCGG GACCAGTTGT TGGCTGGACT GCGCAAAAAG ATACAGCTAA AGTAAACGCC TTCTTTAAAA GACCAGAAAT TGCAGCCATC ATTCCTCAGA GCTATAAGTT TATGTGGAGT GCCAAACCTG CCGACCTGGG TGTGGCCAAT ACAAGTAAAA TATTTGAACT GTATGCCATT AAAGTGACTT CATTGGATGG TAAACCAGAT TTAGGTGGCG AAGCCATTAG CGATGCCCGT CATGATTATG ACCAGAAAGG CAAACCTGAA GTAACCATGT ACATGACCGG CGATGGTGCT GCCAAATGGA AAAAAATCAC TGCAGAAGCT TCGGCGGATG CCAACAATAA AAAAGCAATC GCTATTGTAC TGGACAATAC TGTTTATTCT GCACCGACGG TACAAAATGA GATTCCTAAC GGTATTTCTT CTATTACCGG TAACTTTACA GTAAACGACA CACAGGATTT GGCCAACATC TTAAAAGCAG GTAAATTACC TGCACCGGCA AGAATTGTTG GAGAATTCGT TGTAGGTCCA TCCCTTGGAG AAGTGGCCAT ACACAATGGC TTGCTGTCAT TTGTGCTGGC CTTCGTAGTG ATCCTGATCT TTATGGCTTT GTATTATAAC AAAGCCGGAT GGGTAGCCAA CCTTGCCCTT GTGATCAACC TGTTCTTCAT CATGGGTATA CTGGTGTCGC TGGGTGCCGT GCTTACCTTA CCGGGTATTG CCGGTATCGT ACTGGTAATC GGTTTATCGG TAGATGCAAA CATCCTGATC TTTGAGCGTG TAAGGGAAGA ACTTACTTTA GGTAAATCTA CACCTGCAGC CATTAAAGAA GGTTTCAAAC ATGCCATGTC GTCCATTATC GATTCAAACG TAACGGTATT GGTACTGGGT GTGATCCTTT ATGTATTCGG TAGCGGCCCG GTTCAGGGTT TTGCCACCAC CCTTTGTATT GGTATCCTCT CTTCTTTATT CTGTGCCGTA CTGATCTCCC GTTTGATCTT CGATACCTTG TTAGACAAAA AAGCCAACAT TACTTTTGGC AACAAATACA CCATTCACGC ATTTAAAAAT ATCGCTTTCA ACTTTGTTGG ACACAGAAAG CTTTATTATA CCATATCCTC AATAATTATT GTTTTAGGTT TCATCTTCTA TTTCAAACAT GGCGGCTTAA ACCTGGGTAT CGATTTTAAA GGGGGTAGAA CTTATATCGT TCACTTCGAT AAAGGCATGC ATACCGAAGA TGTGAAAGCA CAGCTGGCTG CTGTATTCCC TGAATCGGAG ACCATTGTTA AAACTGCGGG TGCTGATAAT GAACTGAAAA TTACTACTAC TTTCCACATC ACAGATTCTG ATATCCAGGC TGATAAAATT GTAGAAAATG CCTTAAAAGC AGGTTTGGCC AAAACAGGTG TGAATTATAC TATTGAAAGT AACGAAAAGG TAGGCCCTAT CATTGCAAGC GATATTGTAT ACAGTGCTTA TGGTGCCATA TTGTTCTCCT GCCTGGTAAT GTTTATTTAT ATCGTAGTAA GGTTTAAAAA ACTAAATTAT GGTTTAGGTG CGGTTATCGC TTTGTTCCAT GATGTATTGC TGGTACTTTC TTTCTATACC ATTTTAGATG GGGTACTGCC CTTCTCATTA GAGATTGGCC AGGACTTTAT AGCTGCTATT CTGACAGTTA TGGGTTATAC CATGACAGAA ACCGTAGTTG TATTTGACAG GATCCGTGAG AAACTTGCTG AATCTGGTAA AGAAGACCTG CATGGAAAAG AAAGAGAAAC ACTGATTAAC TTTGCGCTGA ACAGTACATT AAGCCGTACT ATTCTGACTT CATTAACCGT GTTCTTTGTG TTGCTGGTTA TCTTTATCTT TGGTGGCGCC AGTATCCGCG GCTTTATATT TGCCCTGTTA ATTGGTCGTA TTATCGGTAC TTATTCTTCA CTGTGTATCT CTACACCAAT TGTATTGGAT TTGGGTGAAG CCAAAGTAAA AGACAAAAAA TAA
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Protein sequence | MQGKGLIKFL AILLGIVCVY YLSFNFVTSK VEKDAKAYAK GDVEKEKAYL DSMATVPVYP LFGFNYQFCK SKEIKLGLDL KGGMNVTMEI SLGELVKSLA SNTDDVNFNK ALSNAQQQLN AGGKDFISLF VNEYEKLAPG KNLVDFFSNQ DNAKLLKPNA SNNEVKSFLS KEATSAIDRS FIIIRSRIDG FGVVSPNMQK QEGTNRILIE MPGVQDKERV HKLLQGSAEL QFWQVYQNEE VYPVLENINK TLALTLKDTT TATGAAKDTT AKSGSKLAGL AKKADAKDSL SLKNNEAAKS NPLFAVLTPP TYQSENGQPA LRPGPVVGWT AQKDTAKVNA FFKRPEIAAI IPQSYKFMWS AKPADLGVAN TSKIFELYAI KVTSLDGKPD LGGEAISDAR HDYDQKGKPE VTMYMTGDGA AKWKKITAEA SADANNKKAI AIVLDNTVYS APTVQNEIPN GISSITGNFT VNDTQDLANI LKAGKLPAPA RIVGEFVVGP SLGEVAIHNG LLSFVLAFVV ILIFMALYYN KAGWVANLAL VINLFFIMGI LVSLGAVLTL PGIAGIVLVI GLSVDANILI FERVREELTL GKSTPAAIKE GFKHAMSSII DSNVTVLVLG VILYVFGSGP VQGFATTLCI GILSSLFCAV LISRLIFDTL LDKKANITFG NKYTIHAFKN IAFNFVGHRK LYYTISSIII VLGFIFYFKH GGLNLGIDFK GGRTYIVHFD KGMHTEDVKA QLAAVFPESE TIVKTAGADN ELKITTTFHI TDSDIQADKI VENALKAGLA KTGVNYTIES NEKVGPIIAS DIVYSAYGAI LFSCLVMFIY IVVRFKKLNY GLGAVIALFH DVLLVLSFYT ILDGVLPFSL EIGQDFIAAI LTVMGYTMTE TVVVFDRIRE KLAESGKEDL HGKERETLIN FALNSTLSRT ILTSLTVFFV LLVIFIFGGA SIRGFIFALL IGRIIGTYSS LCISTPIVLD LGEAKVKDKK
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