Gene Phep_1420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1420 
Symbol 
ID8252520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1686109 
End bp1689081 
Gene Length2973 bp 
Protein Length990 aa 
Translation table11 
GC content41% 
IMG OID644935073 
Productbifunctional preprotein translocase subunit SecD/SecF 
Protein accessionYP_003091696 
Protein GI255531324 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.469149 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.319601 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGGTA AAGGTTTAAT TAAATTTTTG GCAATACTTT TAGGTATTGT CTGTGTGTAT 
TATCTCTCGT TCAACTTTGT TACCTCTAAA GTTGAAAAAG ACGCAAAAGC TTACGCTAAA
GGGGACGTAG AAAAAGAAAA AGCTTATTTA GATTCGATGG CCACCGTGCC TGTTTATCCG
CTTTTTGGAT TTAATTATCA GTTCTGCAAA TCAAAAGAAA TTAAACTGGG GCTTGACCTT
AAGGGCGGTA TGAACGTAAC GATGGAAATA TCGTTAGGTG AACTGGTTAA ATCTTTGGCC
AGCAATACAG ATGATGTTAA TTTTAACAAA GCCCTTTCCA ATGCTCAGCA ACAATTAAAT
GCTGGTGGAA AAGATTTCAT CAGTTTGTTT GTGAATGAAT ATGAAAAACT TGCGCCGGGT
AAGAACCTGG TAGATTTTTT CTCTAATCAG GACAATGCAA AACTATTAAA ACCAAATGCA
AGCAATAACG AAGTAAAAAG CTTTTTATCT AAAGAAGCTA CCAGTGCTAT CGACCGTTCG
TTCATTATCA TCAGAAGCCG TATTGATGGT TTCGGTGTAG TAAGCCCGAA CATGCAGAAA
CAGGAAGGTA CCAACCGTAT CCTTATCGAA ATGCCGGGTG TGCAGGACAA AGAGCGTGTC
CATAAATTGT TACAAGGTTC TGCCGAACTA CAGTTCTGGC AGGTTTACCA GAACGAGGAA
GTATATCCGG TTTTGGAAAA TATCAACAAA ACACTTGCCC TTACTTTAAA AGATACAACA
ACTGCTACAG GTGCAGCTAA AGATACTACA GCAAAAAGCG GAAGTAAACT GGCAGGACTG
GCTAAAAAAG CTGATGCTAA AGATTCATTA AGCTTAAAAA ACAATGAGGC AGCCAAATCT
AACCCATTGT TTGCCGTATT GACACCTCCA ACCTACCAAT CGGAAAACGG TCAGCCGGCA
TTACGCCCGG GACCAGTTGT TGGCTGGACT GCGCAAAAAG ATACAGCTAA AGTAAACGCC
TTCTTTAAAA GACCAGAAAT TGCAGCCATC ATTCCTCAGA GCTATAAGTT TATGTGGAGT
GCCAAACCTG CCGACCTGGG TGTGGCCAAT ACAAGTAAAA TATTTGAACT GTATGCCATT
AAAGTGACTT CATTGGATGG TAAACCAGAT TTAGGTGGCG AAGCCATTAG CGATGCCCGT
CATGATTATG ACCAGAAAGG CAAACCTGAA GTAACCATGT ACATGACCGG CGATGGTGCT
GCCAAATGGA AAAAAATCAC TGCAGAAGCT TCGGCGGATG CCAACAATAA AAAAGCAATC
GCTATTGTAC TGGACAATAC TGTTTATTCT GCACCGACGG TACAAAATGA GATTCCTAAC
GGTATTTCTT CTATTACCGG TAACTTTACA GTAAACGACA CACAGGATTT GGCCAACATC
TTAAAAGCAG GTAAATTACC TGCACCGGCA AGAATTGTTG GAGAATTCGT TGTAGGTCCA
TCCCTTGGAG AAGTGGCCAT ACACAATGGC TTGCTGTCAT TTGTGCTGGC CTTCGTAGTG
ATCCTGATCT TTATGGCTTT GTATTATAAC AAAGCCGGAT GGGTAGCCAA CCTTGCCCTT
GTGATCAACC TGTTCTTCAT CATGGGTATA CTGGTGTCGC TGGGTGCCGT GCTTACCTTA
CCGGGTATTG CCGGTATCGT ACTGGTAATC GGTTTATCGG TAGATGCAAA CATCCTGATC
TTTGAGCGTG TAAGGGAAGA ACTTACTTTA GGTAAATCTA CACCTGCAGC CATTAAAGAA
GGTTTCAAAC ATGCCATGTC GTCCATTATC GATTCAAACG TAACGGTATT GGTACTGGGT
GTGATCCTTT ATGTATTCGG TAGCGGCCCG GTTCAGGGTT TTGCCACCAC CCTTTGTATT
GGTATCCTCT CTTCTTTATT CTGTGCCGTA CTGATCTCCC GTTTGATCTT CGATACCTTG
TTAGACAAAA AAGCCAACAT TACTTTTGGC AACAAATACA CCATTCACGC ATTTAAAAAT
ATCGCTTTCA ACTTTGTTGG ACACAGAAAG CTTTATTATA CCATATCCTC AATAATTATT
GTTTTAGGTT TCATCTTCTA TTTCAAACAT GGCGGCTTAA ACCTGGGTAT CGATTTTAAA
GGGGGTAGAA CTTATATCGT TCACTTCGAT AAAGGCATGC ATACCGAAGA TGTGAAAGCA
CAGCTGGCTG CTGTATTCCC TGAATCGGAG ACCATTGTTA AAACTGCGGG TGCTGATAAT
GAACTGAAAA TTACTACTAC TTTCCACATC ACAGATTCTG ATATCCAGGC TGATAAAATT
GTAGAAAATG CCTTAAAAGC AGGTTTGGCC AAAACAGGTG TGAATTATAC TATTGAAAGT
AACGAAAAGG TAGGCCCTAT CATTGCAAGC GATATTGTAT ACAGTGCTTA TGGTGCCATA
TTGTTCTCCT GCCTGGTAAT GTTTATTTAT ATCGTAGTAA GGTTTAAAAA ACTAAATTAT
GGTTTAGGTG CGGTTATCGC TTTGTTCCAT GATGTATTGC TGGTACTTTC TTTCTATACC
ATTTTAGATG GGGTACTGCC CTTCTCATTA GAGATTGGCC AGGACTTTAT AGCTGCTATT
CTGACAGTTA TGGGTTATAC CATGACAGAA ACCGTAGTTG TATTTGACAG GATCCGTGAG
AAACTTGCTG AATCTGGTAA AGAAGACCTG CATGGAAAAG AAAGAGAAAC ACTGATTAAC
TTTGCGCTGA ACAGTACATT AAGCCGTACT ATTCTGACTT CATTAACCGT GTTCTTTGTG
TTGCTGGTTA TCTTTATCTT TGGTGGCGCC AGTATCCGCG GCTTTATATT TGCCCTGTTA
ATTGGTCGTA TTATCGGTAC TTATTCTTCA CTGTGTATCT CTACACCAAT TGTATTGGAT
TTGGGTGAAG CCAAAGTAAA AGACAAAAAA TAA
 
Protein sequence
MQGKGLIKFL AILLGIVCVY YLSFNFVTSK VEKDAKAYAK GDVEKEKAYL DSMATVPVYP 
LFGFNYQFCK SKEIKLGLDL KGGMNVTMEI SLGELVKSLA SNTDDVNFNK ALSNAQQQLN
AGGKDFISLF VNEYEKLAPG KNLVDFFSNQ DNAKLLKPNA SNNEVKSFLS KEATSAIDRS
FIIIRSRIDG FGVVSPNMQK QEGTNRILIE MPGVQDKERV HKLLQGSAEL QFWQVYQNEE
VYPVLENINK TLALTLKDTT TATGAAKDTT AKSGSKLAGL AKKADAKDSL SLKNNEAAKS
NPLFAVLTPP TYQSENGQPA LRPGPVVGWT AQKDTAKVNA FFKRPEIAAI IPQSYKFMWS
AKPADLGVAN TSKIFELYAI KVTSLDGKPD LGGEAISDAR HDYDQKGKPE VTMYMTGDGA
AKWKKITAEA SADANNKKAI AIVLDNTVYS APTVQNEIPN GISSITGNFT VNDTQDLANI
LKAGKLPAPA RIVGEFVVGP SLGEVAIHNG LLSFVLAFVV ILIFMALYYN KAGWVANLAL
VINLFFIMGI LVSLGAVLTL PGIAGIVLVI GLSVDANILI FERVREELTL GKSTPAAIKE
GFKHAMSSII DSNVTVLVLG VILYVFGSGP VQGFATTLCI GILSSLFCAV LISRLIFDTL
LDKKANITFG NKYTIHAFKN IAFNFVGHRK LYYTISSIII VLGFIFYFKH GGLNLGIDFK
GGRTYIVHFD KGMHTEDVKA QLAAVFPESE TIVKTAGADN ELKITTTFHI TDSDIQADKI
VENALKAGLA KTGVNYTIES NEKVGPIIAS DIVYSAYGAI LFSCLVMFIY IVVRFKKLNY
GLGAVIALFH DVLLVLSFYT ILDGVLPFSL EIGQDFIAAI LTVMGYTMTE TVVVFDRIRE
KLAESGKEDL HGKERETLIN FALNSTLSRT ILTSLTVFFV LLVIFIFGGA SIRGFIFALL
IGRIIGTYSS LCISTPIVLD LGEAKVKDKK