| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1301 |
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| Symbol | |
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| ID | 8252401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1548589 |
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| End bp | 1550304 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644934955 |
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| Product | RagB/SusD domain protein |
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| Protein accession | YP_003091578 |
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| Protein GI | 255531206 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0026313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA AAATATTTTT AGCTGCAATC TTTATGGTTC TAATGGCTGC AGCCTGTAAA
AAAGGAGGGG TGCTGGAGCA GGTTAAAACC ACAGATTTAA CAGAAGAAAG TACCTTTGCA
GACAGTGCCC GCACTATGCA GTTCCTAACC AGGATTTATA CTGATATTGG CTTTAGTTCC
GATCCTAAAA GGTTTGGCAG CAGTGTAGGG GTATACAGCA TTTGTGATGA GGTGGAAGGC
TCGTTGCTCA GTGCTACTGC ATTTAACGTC ATTTTCCAGA CTGGAGCAAT CAGTGCATTA
AATGTGCCTA CTGATGCCTG GGTAACTACA TACGCCAACA TTAGAAGGGT AAACTTATTG
CTGAGCCATT TGCAGACCAC ACCGCTATCT CAGCGTTTAA GGGACAGGAT TGCCGGTGAG
GCCCGCTTTT TAAGGGCCTG GTATTATTTT ATCCTGATTA AACATTACGG GGGCGTGCCG
CTGGTAGGCG ATGTGGTTTA TGGCGCCACT GACCCGGTTT CAGGCAAGCG TGCCACTTAT
GAAGAATGTG TGAATTATAT TGAATCGGAA TGCGATGCTG CTGCCCTGGC CCTTCCACTC
GTACAAACCG GGCTCGATTT TGGACGCATT ACCAAAGGTG CAGCATTGGC ACTAAAATCC
AGGTTGCTGT TGTATGCTGC AAGCCCGCTG TTTAACGGCC GGGTAGATAT GGATGGGGTA
TTGGGTTATC CGAATGCCGA TCCTGCCCGA TGGAGCAAGG CTGCAAAAGC AGCGCTGGAT
GTGATCAGCC TGAACCAGTA CAGTCTTTAT GAGCTGGCTG GCGGTCTGGG CTTTCAGAAA
GTATTTACCC TGCGCAAAAA CAGTGAATAC ATACTGGCTT CCATGGCTGG TAATAACCGT
ACGCTGGAAG CCATCTGGGA TCCGGCGACC AGGACAGGGT CGGGCAGTGC CATGCCCTAC
CAGGAACTGG TAGATGCTTT TGGTACCATC AATGGCAAAG CGATTACGGA GGACCTTAAA
TCGCCTGGAA ACCCTACAGG TTATGATCCC ACAAATCCTT ATGTAAACCG CGATCCCCGT
TTCAACTGGA GCATCCTGTA CAATGAAGCC CCACGGTTGA ACACCAGTAA AACCGTTACA
CCGGTATTTA CTTACGCAGG TGCTGCGCAG GACGGTTTTA ACTTTACCAA AACCGGCTAT
TATTTAAGAA AAATGCTGGA CGACAATACC ATTGCCAGTA GCACCTCATC GGCAACAGAA
CGCTGCTTTC CTTTAATCCG CTATGCCGAG ATCCTGTTAA ATTATGCCGA AGCCAGTAAT
GAGGCAGGTG ATACACAAAC CGCATACACA CAGCTCAAGG CCATTCGCAA GCGCGCAGGC
ATACTGGCTG GTCCGGAAGA CGATTATGGA CTGGCGGAGG GGCTTACTAA AGAAGGGATG
CGGACGGTGA TCCAGAATGA AAGAAGGGTA GAGCTGGCTA TTGAAGAGCA TCGCTACTGG
GATGTACGCA GATGGAAGAT TGCAGAAAAT GTATCCAATA AAACCCTGCA CGGGATGAAA
ATCACCAGGC TAGGTACCGG TACACCTGCA ACCTATACTT ACGAACTGAT CAATATCCGT
ACACCGGCCT TTGTTGCACC GAAATATTAC CTGTGGCCAA TCCCGCAGGG CGAGGTCAAT
AAATCAGCAG AGCTGATACA AAACCCGGGC TGGTAA
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| Protein sequence | MKKKIFLAAI FMVLMAAACK KGGVLEQVKT TDLTEESTFA DSARTMQFLT RIYTDIGFSS
DPKRFGSSVG VYSICDEVEG SLLSATAFNV IFQTGAISAL NVPTDAWVTT YANIRRVNLL
LSHLQTTPLS QRLRDRIAGE ARFLRAWYYF ILIKHYGGVP LVGDVVYGAT DPVSGKRATY
EECVNYIESE CDAAALALPL VQTGLDFGRI TKGAALALKS RLLLYAASPL FNGRVDMDGV
LGYPNADPAR WSKAAKAALD VISLNQYSLY ELAGGLGFQK VFTLRKNSEY ILASMAGNNR
TLEAIWDPAT RTGSGSAMPY QELVDAFGTI NGKAITEDLK SPGNPTGYDP TNPYVNRDPR
FNWSILYNEA PRLNTSKTVT PVFTYAGAAQ DGFNFTKTGY YLRKMLDDNT IASSTSSATE
RCFPLIRYAE ILLNYAEASN EAGDTQTAYT QLKAIRKRAG ILAGPEDDYG LAEGLTKEGM
RTVIQNERRV ELAIEEHRYW DVRRWKIAEN VSNKTLHGMK ITRLGTGTPA TYTYELINIR
TPAFVAPKYY LWPIPQGEVN KSAELIQNPG W
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