| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1248 |
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| Symbol | |
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| ID | 8252346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1470269 |
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| End bp | 1473403 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644934901 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003091526 |
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| Protein GI | 255531154 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00194744 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAGA AATTTATAGA CAACCCGGTA TTATCTACAG TAATATCGGT GATCATTGTC
ATACTAGGCT TATTGGGCCT GTTTTCCCTG CCCATATCCC AATATCCGGA TATTGCACCG
CCCGCTGTTG AGGTCAGTAC AGCTTATCAG GGCGCAAGTG CGGATGTGGT GATGAAAAGT
GTGATTATCC CTCTGGAAGA GCAGATTAAC GGGGTGGAAA ACATGACTTA CATGACCTCT
AAGGCCAGCA ATGATGGCAG TGCAAGCATT ACGATTAATT TTAAGCAGGG TACCGATCCA
GATATGGCCG CTATTAACGT ACAGAACAGG ATTACCAAGG CAACCAGTTT ATTACCTGCA
GAGGTGGTAA AAATGGGTAT TACGACCAGC AAAAGGCTGA ACAGCGAGGT GTTTAGTTTT
CTGCTGTATA GTGAAGATGG AAAATATGAC CAGAAGTTTC TGGACAATTA CCTGAAGATT
AACATTATCC CTCAGATCAA AAGGATCCAG GGTATTGGAG ATGCACAGGT TTATGGGGGT
AAAGATTACA GCATGCGAAT ATGGCTGAAA CCGGATGCCA TGGCAGCTTA TGGTCTTATT
CCGGCTGATA TTGTGAATGC CCTGGCAGAG CAGAATATTG AAGCCGCACC AGGTAAGGTG
GGTGAAAACA GCAACCAGAG CTTTCAGTAT ACCCTAAAGT ACACCGGCCG CTTTGAAAAA
GCGGAAGAAT TTGAACACAT CATCCTGAAA TCGGTAGGTA ACGGGCAGGT GTTAAAACTG
AAAGATGTAG CAGACATCAA CCTGGGTTCA TTTACCTATT CCAGCACACT GACGGCACAG
GGGCAAGAGT CACCTTATGT TGCTGTGAGC CAGACTTCAG GTTCGAATGC GCATGATATT
ATCAGGCAAT GTGAAAAGAT ATTAAAGGAT GCAGAGAAAA GTTTTCCAAA AGGGGTGAAG
ATAGGGGTAT TTGCAAATGC CAATGAATTT CTGGATGCTT CCATTTCCAA ACTGATCTTT
ACCATTATAG AAGCCTTTAT CCTGGTATTT ATTGTGGTAT TTATTTTTCT TCAGGATTTC
CGTTCTACGC TGATACCGGC CATTGCAGTT CCGGTAGCTA TTATTGGTAC TTTCTTTTTC
CTGAAGTTAT TTGGGTTTAC CATAAACCTG CTTACTCTAT TTGCGCTGGT ACTGGCCATT
GGTATTGTGG TAGATGATGC CATTGTAGTG GTAGAAGCGG TGCATGCCAA GCTGGACCAT
GGGGCTAAGT CGGCCAAAAA AGCGACCCTG CATGCGATGA GCGAGATCAG TTCGGCCATC
ATTTCCATTA CCCTGATCAT GGCTGCGGTA TTTGTTCCCG TAACCTTTGT GACAGGATCG
GTAGGTGTAT TTTACAAGCA ATTTGGTTTA ACACTGGCGG TAGCCATTAT CATATCGGCA
GTAAATGCGC TTACCCTGAG CCCTGCTCTT TGTGCTTTGT TGCTTAAGCC ACATCAGGGA
CATGACCAGG TTAAAAAAGG CTTTATGCAG CGGTTTTATG ACGGCTTTAA CGCCTCATTT
TCAGCCATGA CCAACCGCTA TAAAAAATCT GTGGTGTTCC TGGTGAACAG GAAGTGGATT
GCTTTTATGG GTATAGCCTT GTTTTCGGTA TTGTTCTGGT TTTTGGTGAA GACTACCCCA
ACTGGTTTTG TACCCAATGA GGACAGTGGT TCTATTTATG GTAACGTGAT CCTTCCACCG
GCAACATCAC TGGAGCGAAC AGAGGTAATT GCCAACCAGA TTGACAGCAT AGCACGTTCC
ATCCCTGAAG TAGAATTGTC GTCGCGGCTG GCGGGTATGG ATTTAATGAG TGGTACGGGA
AGTTCTTACG CCGCTATATT TATCCGTCTT AAACCCTGGA AGGAAAGAAC AAAGGAGGGG
CAGGACATTA AAAGCATAGT GGGACAGCTG TTTGCCAAAA CTGCCAATAT TAAAGGAGCC
AGTATTATAT TTTTTGCAGC GCCAACCTTA CAGGGCTTTG GAAATAACGA TGGGTTTGAA
TTTCAGCTGC AGGATAAGAC CGGCGGTAGT TATAAGGCTT TTGATGCTGT AATTGGCAAG
TTTATGGGTA CGCTGAACCA GCGGCCAGAA ATCATGTATG CTGCTACATC CTACAATACC
AGCTTCCCGC AATATGAAGT AAGTGTAAAC GTAGCGAAAT GTAAGGAAGC CGGTGTTGCG
GTGAGTACTG TATTGGGGAC CTTACAGGGG TATCTGGGTG GTATTTATGC TTCTGATTTT
AACCGTTTTG GTAAGCAATA CCGTGTCATG ATCCAGGCAG AGGCCGGACA GAGGAGCAAT
AAAGAAGCGA TCAGCAAAAT ATTTGTCAGA AATGAGCGCG GTGTAATGGC GCCGATATCA
GCGTTTATAA CTTTAAAGAA AACCTATGGT CCGGAATTCA TCAACCGCTT TAACCTGTTT
ACGGCTGCTG CGGTAAATGG TGCACCTAAG CCAGGATACA GTTCTGGTGA TGCAATTAAA
GCCATACAGG AAGTGGCGGC GCAGACTTTA CCACAGGGCT ATACTTTTGA ATTCTCGGGA
CTGACGCTGG AAGAACTATC GAGCGGAAAC CAGACCCTGC TGATCTTTAT ACTGAGTTTG
CTGTTCATTT ACTTTTTGCT AAGTGCCCAG TATAAGAGTT ATATTCTGCC CTTTTCGGTT
CTGCTTTCGC TGCCTATTGG TTTGGCCGGT GCGTTTTTGT TCGCCCGTTT ATTTGGGCTT
GACAATAACA TCTTCCTGCA GATCAGCCTG ATCATGCTGA TCGGATTGCT GGCTAAAAAT
GCAATCCTGA TTGTAGAGTT TGCCCTGATG CACAGGTTAA GTGGAAGAAA CCTGGTCCAG
TCGGCCATAG CTGGTGCCAC GGCCAGGTTA AGGCCTATTC TGATGACCTC ATTTGCCTTC
GTTTTTGGTT TGCTCCCTTT AATGGTTGCA ACAGGTGCGG GGGCCATCAG TAACCGCTCG
ATAGGTACTG CAGCTGTTGG CGGGATGCTG ATCGGAACAG TGTTTGGGGT GTTTGTGATC
CCTGTGTTAT TTGTGGTTTT CCAGGCCCTG CAGGAAAAGA TCAGTGGTAA CCCAAAAACT
GTTGACATTG AATAA
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| Protein sequence | MLKKFIDNPV LSTVISVIIV ILGLLGLFSL PISQYPDIAP PAVEVSTAYQ GASADVVMKS
VIIPLEEQIN GVENMTYMTS KASNDGSASI TINFKQGTDP DMAAINVQNR ITKATSLLPA
EVVKMGITTS KRLNSEVFSF LLYSEDGKYD QKFLDNYLKI NIIPQIKRIQ GIGDAQVYGG
KDYSMRIWLK PDAMAAYGLI PADIVNALAE QNIEAAPGKV GENSNQSFQY TLKYTGRFEK
AEEFEHIILK SVGNGQVLKL KDVADINLGS FTYSSTLTAQ GQESPYVAVS QTSGSNAHDI
IRQCEKILKD AEKSFPKGVK IGVFANANEF LDASISKLIF TIIEAFILVF IVVFIFLQDF
RSTLIPAIAV PVAIIGTFFF LKLFGFTINL LTLFALVLAI GIVVDDAIVV VEAVHAKLDH
GAKSAKKATL HAMSEISSAI ISITLIMAAV FVPVTFVTGS VGVFYKQFGL TLAVAIIISA
VNALTLSPAL CALLLKPHQG HDQVKKGFMQ RFYDGFNASF SAMTNRYKKS VVFLVNRKWI
AFMGIALFSV LFWFLVKTTP TGFVPNEDSG SIYGNVILPP ATSLERTEVI ANQIDSIARS
IPEVELSSRL AGMDLMSGTG SSYAAIFIRL KPWKERTKEG QDIKSIVGQL FAKTANIKGA
SIIFFAAPTL QGFGNNDGFE FQLQDKTGGS YKAFDAVIGK FMGTLNQRPE IMYAATSYNT
SFPQYEVSVN VAKCKEAGVA VSTVLGTLQG YLGGIYASDF NRFGKQYRVM IQAEAGQRSN
KEAISKIFVR NERGVMAPIS AFITLKKTYG PEFINRFNLF TAAAVNGAPK PGYSSGDAIK
AIQEVAAQTL PQGYTFEFSG LTLEELSSGN QTLLIFILSL LFIYFLLSAQ YKSYILPFSV
LLSLPIGLAG AFLFARLFGL DNNIFLQISL IMLIGLLAKN AILIVEFALM HRLSGRNLVQ
SAIAGATARL RPILMTSFAF VFGLLPLMVA TGAGAISNRS IGTAAVGGML IGTVFGVFVI
PVLFVVFQAL QEKISGNPKT VDIE
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