Gene Phep_1140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1140 
Symbol 
ID8252234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1337021 
End bp1338817 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content39% 
IMG OID644934791 
Productpeptidase M56 BlaR1 
Protein accessionYP_003091420 
Protein GI255531048 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG4219] Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACAA TTGTAAACAA CCTGATCAAA GCAACAGGAT GGAGTATCTT TCATTCTTTA 
TGGCAAGCTG CAATTATTTA TGGAGTACTT TTACTTCTAA TTGCCTTTTT TCCAAAAATG
ACGGCAAAAC TAAAGCACAA CCTGGCTTAT GGTGCCATAA GTCTGATGTT TGCAGGCTTC
TGCATTACTT TTTTCTCAAT TTTTAAGCTT CCTGCTAATG ATATGCTTAT TTCTGCAGGT
AATAAAGAAA TTGTGCTGAT GCAATATGCA TCGGACCTGT CTGATGGGAT CAACCAGAAA
ACAGAGCAGT TTTTTCCTTA TATTGTTAAT GTTTACGCCA TTGGCCTGTT GTGCCAGCTG
CTGATCCTTG CCGCGGGCTA TAGAAAGCTG CATAAGCTTA AGGAGGCGGA CAAAACATCT
GTTCCCGAAG CCTGGTTAAA GGTTTTTAAG GAAATGCTAT CCAGGCTGGG GCTCCGTCAG
CCCATCAGTT TCTACCTTTC TGACCAGGTA AATATACCGC TCGTAATAGG TTATTTTAAA
CCAATGGTAT TGTTTCCCAT AGCGCTTGTG GCGCAACTGG ACATCAAGCA GGTGGAAGCC
ATATTGATCC ATGAACTTTC GCATATCCGA AGAAACGATT ACCTGCTCAA TCTGATTAAA
ACTGCCATCG AGACCTTAAT GTTTTTTAAT CCTTTCATCT GGTTAAGCAG CAGGTTTATC
AATATAGAAC GTGAACATGC CTGCGACGAT CTTGTACTTA AACTCACAGG AACACCATTA
ACTTATGCAC ATGCGTTGTT AAAACTTGAA ATCCTTAAAG ACAAAACAAC ACCTGCTTTG
TCAATGGCAG CAAATGGCAG CAACCAACAT TTATACCAGC GCATTAAAAG AATTACAGAT
ATGAAGACCA ATTATATGAA TGCCAAACAG CAGATTTTTG CCATCACTTT GACAATAGCT
ACCGTAATAT CGCTGGCCTG GATCAGTCCT GAAAAAACCG AACCGGCCTT CCTAAAACCT
CAGGTACCTG TTTTACCTGT GCCTCCTGTC CCGGCTCCGC TTTCTGAAGC AAAAATTCGA
CATTTCAGCA ATCCATTAGT AAAATTGAAT GTGCTGCCTC TCTTAAGACA GGACACAACC
AGAAAGAAAC ACAAGTTTAA AATTGTGACC ATTGATGCCA GTGGCCGTAA GCAGGAATAC
AATTCTGTAA AGGAAATGCC CGACAGTTTA AGAAAAGAAG TGATCAAAGA TACCTTTGTA
AGCAAGGGCG ATTTCGATTT CAATATCGAT TCGGTGGTCA ATAAAAGTCT GACGTTTACC
ATGTCTCCGG AATGGCAGTC GGGTTTCAAA AAAATGTCTG AAGACCTGCA AAAACAGTTC
AGTGCTGAAG AATGGACAAA AAACAGTGAG GACATTAAAA AGAATTCAGA AAAGATGAAA
AAATTCTTTG ATTCGAAAGA GTGGAAAAAA CAACAGCAGG ATATTAAAAA AAATTCAGAA
AGAATCCAGC TGTTTTTTAA TTCTGCTGAA TGGAAAAATC AGCAAAAACA GCTTATTGAA
CATAGCCGGG AAATCGCGAT AAAATTAAAT TCACCTGAAT TTAAAAAAGA ATTGGATAAG
GCCAAGTTAT CAGAAAAGAT GCGACTGCAC TTCTCGGCCC CTATTTTTAA GCAAAAATCT
GAAGAGACTA AAACACTCGA AGCCTCTAAA GCATACCAGG ACCTGAAGAA AAAGTTTGAT
GAGGATGTAG AAACTTTGAA GAAAAAAACA ATTAAAGCGG ATACCACATC ATTTTAA
 
Protein sequence
METIVNNLIK ATGWSIFHSL WQAAIIYGVL LLLIAFFPKM TAKLKHNLAY GAISLMFAGF 
CITFFSIFKL PANDMLISAG NKEIVLMQYA SDLSDGINQK TEQFFPYIVN VYAIGLLCQL
LILAAGYRKL HKLKEADKTS VPEAWLKVFK EMLSRLGLRQ PISFYLSDQV NIPLVIGYFK
PMVLFPIALV AQLDIKQVEA ILIHELSHIR RNDYLLNLIK TAIETLMFFN PFIWLSSRFI
NIEREHACDD LVLKLTGTPL TYAHALLKLE ILKDKTTPAL SMAANGSNQH LYQRIKRITD
MKTNYMNAKQ QIFAITLTIA TVISLAWISP EKTEPAFLKP QVPVLPVPPV PAPLSEAKIR
HFSNPLVKLN VLPLLRQDTT RKKHKFKIVT IDASGRKQEY NSVKEMPDSL RKEVIKDTFV
SKGDFDFNID SVVNKSLTFT MSPEWQSGFK KMSEDLQKQF SAEEWTKNSE DIKKNSEKMK
KFFDSKEWKK QQQDIKKNSE RIQLFFNSAE WKNQQKQLIE HSREIAIKLN SPEFKKELDK
AKLSEKMRLH FSAPIFKQKS EETKTLEASK AYQDLKKKFD EDVETLKKKT IKADTTSF