| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1097 |
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| Symbol | |
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| ID | 8252191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1279800 |
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| End bp | 1283489 |
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| Gene Length | 3690 bp |
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| Protein Length | 1229 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644934748 |
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| Product | YD repeat protein |
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| Protein accession | YP_003091377 |
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| Protein GI | 255531005 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.791752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000274764 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGATTATTA ACATGAAAGT ATTTATGTAT ATGAAGCACT TCGAAAAAAA ATGGATTAAA
ACTATCGCTG TAATGTTTTG TTTTTTTATG CCTTTTATAG GATATACACA AACATCGCAA
ACAAATATAA TAGCTCCCTC ACCAACAGCC GCGGCACTTG GTAAGTACGG GGATATGCCA
GTATCTACCT ATACCGGCAT ACCCAATATT AGTATTCCAT TATATAATGT AACAAGTGGG
AGTTTGAACC TTCCATTGAG TTTAAGTTAT CATGCTTCCG GGATACGGGT AGAGGAAGAA
GCTTCCTGGT GTGGTTTGGG CTGGAGCCTA ATTTCTGGCG GGGTTATCAC AAGGTCTGTT
AGAGGACTGG ATGATCTTGC AATAAGTTCC GGTTATACCT CATATCCTGA TTACATTTTA
CCGGTTACAG CAAATGAGTC GAATGATTAT TTGCCAGGCA GTAATATTTG GAGCGATCTT
TATTATTTCC GAGATGTGCA TGGTGGTGCT AAAGATGCAG AACCTGATGT ATTTTACTTT
AATTTTTCAG GTCATTCTGG TAAATTCTTT ATAAACCAGA AGGCGAATAT AAATGCTCCA
TACACTTTTA ATGTAGAATC ACAGGAGAAA ATAAAGATCA GTGTAGCACT AACGGGAGAT
AAATATGTAT GGACTTTTAT AACCGCTGAT GGTACAAAAT ATATATTTGG CACAGAAGAA
AAGACACAGA CATTTAATGG GTCGTTTAAC TATTACGAAC CGTCCCCAGA TGCAATACCA
GGAGATTACA ATCCTAAAAT CATTACTTCA TCGTGGTATC TGGATAAGAT TATTTCACCG
AATGGCGATG CCATTGATTT TGTGTATACG GCTCCATCTT TAAAGGGAAG CAGAAAAGCG
ATCAGTAAAA GTGAAGAACG AATCTATGTA CTAGGGGTCA CATCAAATGG TACTCCCGGC
TGCCCGCCTG ACCCAATCCC TCCCAGACAT TCCTATATGA GCTCTTTAAG TATAGTTTTT
GATGTCTATC TGAGCGAGAT CAATTTTAAG AATGGAAATA TTAAATTTAA TACTTCTGAT
AGAAATGACC TTCAACCTAT GCCCGGCAGT TCAATGCCTA AGAAACTGGA TAATATAGTT
ATATCGGCAG TAGGGCTTGA TGGAGGACTA CAAGTAATTA AGGAATTTGA ATTTGGATAT
GATTATTTTT TGAATTCGGA TGCACATTTA AGCTATACTT TAGCGCCGGG GGTGCCTACA
TATAGCTATT CTACCACTTA TAGTGGTAAG CGGTTAAAGT TATTAAGTTT AAGAGAAAAA
AACGGTTCAG TTCTCTCTTC TCCTTATGAG TTTTCTTACC AAACTACTTC ATATGTTTAT
GGAGATATAC CCGACAAGTA TTCTAAATCC AGAGATCACT GGGGCTTTTT TAATAATGCA
AATAACGTTA AAATCCAGGA TCCCATTAGT ACTTACGGAT ATGTAAGCAC GTTATTGCCT
CCTTATCTTG ATGTTGCTGC AAATAAATAT TATACCGGTG CTGACAGAAA AATTAATGAG
GAGCAAATTA CCTTGGGCAT GTTGAAGGAT ATTAAATATC CTACAGGTGG TACAACGAGT
TTTGTTTACG AAAGTAATGA TTATTCAAAC TTCCCACCTG AAAACAGGAG GGATACAATT
AGTCATGTAC TATTAGCTGT TGGGGAACTC GTTCCGCCGG AAGAACTGGA GGATCCAGTT
ATTGTAGGAA CTGCCAATAT TAATATGAGT GAAACAGCAC TTGTTAATTT ACTAGGTTAT
GCCTTTTATT CTGAGGAATA CTGTAATAAT CCTTTATCTC CATATGGTGG TACTTGCTCC
GTAACTATTA AAAATACAGG GACTACGCCA TATTTTCTTA AGACGATTGT ACCCGTTTTT
GATTGTAATA GTGGGGGAGC TGCTATTACC CAATCTGTTA GTTTACCAGC AGGAACTTAT
GAAATAAAAG TATTTGCAGA TGCATATGCC GTAATTGGAT TTTCAGCAAC ATATGAACAA
ATACTTGCCG AGCCATTACT ATCCAAGAAA GGTGGAGGTG TACGTATTTT AAGAACCATT
GATTACGACG GTATAGACCA TGCCAACGAT GTTATTAAAA AATACAAGTA TACCCGTACA
GAAAACAACA TTGAAAAGTC CAGTGGACGT TTAATGACAC CCCTAAATTA TGAATATCTA
TATAGTATGC AAGGAACCAG AGGATGTGGA GATTCTGGCT CCGGAGTTGT TTTTGAGGCC
ACTTATCTTA GCAGGTCTTC CCAATCTAAT ATAGCGATGG GAAATTCTGC ACAGGGGAAT
CCTATTGGAT ATAATGTTGT AACAGTATTG AATGGAGAAA ATGGGGAAAA TGGAAAAACC
GTTTATACCT ATAGAAATGG TGCTGAAGAA TTAAGCAGTT CTTTTTTTCC TAACATCCCC
AATCAGCCAA ATCCTGGAAA TGGGTATTTG CTAAATCAAA CAGATTATAA AGCAGTTCAA
GGTGGCCTCT TTCGGAAAGT TAAGGAAATC CGAAAAGAAT ATATAGATGA GCCAGATTTA
AAGCGAACTG TAAAAGGATT CAGGATGATG GGTGGGGAAA CAATTGATGG GGCTATTTTA
AATGGGACAC CTTATGTGCC GCCAATTAAA TTCTATGATA GCGTTTCTGA ATGGTGGCAT
CCATTAATAG ATACGGTAAT AACTTATGAT CCAAATGATG AATCGAAATT TTCGTTGGCC
ACTACAGAAT ATTTCTATGA GAACCTTACA CATCAGCAAC TCACTAAAAC TATACAGAGC
CAGAGTGACG GTAGTAAGAT TATAACCAAA TATACTTATC CAGCTGATTA TGTTTCTATA
AATACCGGAA CTATTGGTTA TATGAAGGGA GATCTTCATA TGCATAATGC AGTTATAGAG
AAAGTTGTAG AGAAAGAAAA GGACGGTGTA ACTAAAACAA TTGGTGGAAC TTTTACGAAT
TACAAAGACG TAGATGGTAA TGAAGCTGCT GGAAGTGCAC TGCCAGCTAA AATTAATGTT
TTAAACTTAA ATGCGCCTAA ATCATCTTTC GTTTCTTCTT TAGCTACTGG TACTGCTGCT
GATCCGGAGT ATATACAAGT GCAGTCAATT AAGTACGATA CCCATGGACA TACAATAGAA
ACAACTAATA AGGAGCATTT TACGACTTCA TATATTTGGG GATATAATGG TGCCTACCCT
GTAGCAGAGG TAAAAAATGC TAAAAAGACA GACGTATATT ATAACGGTTT TGAAGACCTT
ACAGGTAATA GTACCGATAG TAAAGCAGGG TTATATAGTC GTACTGGAGG TTATCTGTAT
ACGATAAGCG GTTTAAGCAA TGGTACTTAT AATTTAAGCT ATTGGCAGAA GTCTGGAACC
AGCTGGAATA ATATTAATGT TAATAATATA GTTGTTACAG GCAATTCATA CACCATTAAC
CTGGCAGGGC ATATTGATGA AATTTGGTTC TATCCAGAAA ATGCTCAAAT GAGCGCTTAT
ACCTTTTCAC CTCTTATGGG TATGACCAGC GCTACCGATG CCAAAGGCAT GACCACCTAT
TATGAATACG ATAGTTTCCA GCGGTTAAAG TATATCAAAG ACCAGGATGG GAACATTGTC
AAATCTTACG ATTATCATTA TAAACCTTAA
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| Protein sequence | MIINMKVFMY MKHFEKKWIK TIAVMFCFFM PFIGYTQTSQ TNIIAPSPTA AALGKYGDMP
VSTYTGIPNI SIPLYNVTSG SLNLPLSLSY HASGIRVEEE ASWCGLGWSL ISGGVITRSV
RGLDDLAISS GYTSYPDYIL PVTANESNDY LPGSNIWSDL YYFRDVHGGA KDAEPDVFYF
NFSGHSGKFF INQKANINAP YTFNVESQEK IKISVALTGD KYVWTFITAD GTKYIFGTEE
KTQTFNGSFN YYEPSPDAIP GDYNPKIITS SWYLDKIISP NGDAIDFVYT APSLKGSRKA
ISKSEERIYV LGVTSNGTPG CPPDPIPPRH SYMSSLSIVF DVYLSEINFK NGNIKFNTSD
RNDLQPMPGS SMPKKLDNIV ISAVGLDGGL QVIKEFEFGY DYFLNSDAHL SYTLAPGVPT
YSYSTTYSGK RLKLLSLREK NGSVLSSPYE FSYQTTSYVY GDIPDKYSKS RDHWGFFNNA
NNVKIQDPIS TYGYVSTLLP PYLDVAANKY YTGADRKINE EQITLGMLKD IKYPTGGTTS
FVYESNDYSN FPPENRRDTI SHVLLAVGEL VPPEELEDPV IVGTANINMS ETALVNLLGY
AFYSEEYCNN PLSPYGGTCS VTIKNTGTTP YFLKTIVPVF DCNSGGAAIT QSVSLPAGTY
EIKVFADAYA VIGFSATYEQ ILAEPLLSKK GGGVRILRTI DYDGIDHAND VIKKYKYTRT
ENNIEKSSGR LMTPLNYEYL YSMQGTRGCG DSGSGVVFEA TYLSRSSQSN IAMGNSAQGN
PIGYNVVTVL NGENGENGKT VYTYRNGAEE LSSSFFPNIP NQPNPGNGYL LNQTDYKAVQ
GGLFRKVKEI RKEYIDEPDL KRTVKGFRMM GGETIDGAIL NGTPYVPPIK FYDSVSEWWH
PLIDTVITYD PNDESKFSLA TTEYFYENLT HQQLTKTIQS QSDGSKIITK YTYPADYVSI
NTGTIGYMKG DLHMHNAVIE KVVEKEKDGV TKTIGGTFTN YKDVDGNEAA GSALPAKINV
LNLNAPKSSF VSSLATGTAA DPEYIQVQSI KYDTHGHTIE TTNKEHFTTS YIWGYNGAYP
VAEVKNAKKT DVYYNGFEDL TGNSTDSKAG LYSRTGGYLY TISGLSNGTY NLSYWQKSGT
SWNNINVNNI VVTGNSYTIN LAGHIDEIWF YPENAQMSAY TFSPLMGMTS ATDAKGMTTY
YEYDSFQRLK YIKDQDGNIV KSYDYHYKP
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