Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0882 |
Symbol | |
ID | 8251976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 1036569 |
End bp | 1037180 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644934537 |
Product | fumarylacetoacetate (FAA) hydrolase |
Protein accession | YP_003091166 |
Protein GI | 255530794 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00308706 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAGATAA TTGCCATAGG ACGCAACTAC GCAGAACACG CCAAAGAATT AAATAACCCC ATACCCGATC AGCCGGTTAT ATTTTTAAAA CCCGACACCG CCGTTTTAAA AGACAACAAA CCTTTTTACA TTCCCGATTT CTCTTCCGAC ATCCATTACG AGATTGAAGT GGTATTAAAG ATAGCAAAAG AAGGAAAGCA CATTGCTGAA AAATTTGCGC ACAAGTATTA TGAAGAACTG GGTTTGGGTA TAGATTTTAC CGCCCGGGAT ATCCAAAGTG CACATAAAGC AAAAGGATTG CCCTGGGAAC TGGCCAAGGC ATTCGACCAT TCAGCAGCCA TCAGCAATTT TATTCCTAAA ACAGCCATTA AAGATCTCTC TGACCTTTCC TTTACCTTAA ACATTAACGG AGAACCCCGG CAAAATGGCA ATACCAGGGA TATTTTATTC TCCTTTGAAA AAATAATCGC TTTTGTATCC CGATACATTA CCCTTAAAAA GGGAGACCTG ATTTTTACCG GTACCCCGGA AGGGGTTGGC CAGGTTAAAC CAGGTGATAA ACTGGAAGGC TGGCTGCAGG GCCAACAACT ACTTAATTTT GATATAAAAT AG
|
Protein sequence | MKIIAIGRNY AEHAKELNNP IPDQPVIFLK PDTAVLKDNK PFYIPDFSSD IHYEIEVVLK IAKEGKHIAE KFAHKYYEEL GLGIDFTARD IQSAHKAKGL PWELAKAFDH SAAISNFIPK TAIKDLSDLS FTLNINGEPR QNGNTRDILF SFEKIIAFVS RYITLKKGDL IFTGTPEGVG QVKPGDKLEG WLQGQQLLNF DIK
|
| |