Gene Phep_0878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0878 
Symbol 
ID8251972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1033599 
End bp1034150 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content38% 
IMG OID644934533 
Productbifunctional deaminase-reductase domain protein 
Protein accessionYP_003091162 
Protein GI255530790 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0262] Dihydrofolate reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00263452 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAAAAG TAATTGCCGC ATTCAATATG ACACTTGACG GAATTTGTGA CCATACAGCA 
GGAATTCCCG ACGAAGAAAT ACACTATCAT TATACTAACC TGCTAAATAA CGCAGGCAGC
ATTCTATATG GAAGGATAAC CTATCAACTC ATGCAATTTT GGCAAACACT GTTAAAAAAT
CCTTCCGATG AAAAATCAAT GAATGATTTT GCCATTGCTA TAGACAAAAT TCCAAAAATT
GTTTTTTCAA ATACGCTTAA AAGCACAGAC TGGGACAGTG CTCAATTGTC AGATCGAACT
CTTGAAGAAG AAGTTTTAGA ACTCAAACAA CAATCGGGTA AAGACATTTT AGTGGGCAGC
CGGAGTTTAA TTATACAGCT CATGAAACTT AATTTGATTG ATGAGTTGCA GCTTTGTATT
TACCCTGTTA TAGCGGGAGC AGGTTTGCCA TTATTTGAAA ACCTAAAAGA CAGGACCATT
CTTAAATTGA TAAAGACAAA AACTTTTAGC GGTGGTGCAG TAACGCTTTA TTATGAGCGG
GGCGCCGGGT GA
 
Protein sequence
MRKVIAAFNM TLDGICDHTA GIPDEEIHYH YTNLLNNAGS ILYGRITYQL MQFWQTLLKN 
PSDEKSMNDF AIAIDKIPKI VFSNTLKSTD WDSAQLSDRT LEEEVLELKQ QSGKDILVGS
RSLIIQLMKL NLIDELQLCI YPVIAGAGLP LFENLKDRTI LKLIKTKTFS GGAVTLYYER
GAG