| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0877 |
|---|
| Symbol | |
|---|
| ID | 8251971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1032782 |
|---|
| End bp | 1033576 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644934532 |
|---|
| Product | exodeoxyribonuclease III Xth |
|---|
| Protein accession | YP_003091161 |
|---|
| Protein GI | 255530789 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00278743 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG CAAGCTATAA CATCAACGGT ATCAACGCGC GTCTGGACAA TTTACTACGC
TGGCTTAAAG AGGCCCGGCC CGATGTGGTA TGTTTGCAGG AGCTTAAAGC GCCAGATAAC
AGGTTCCCCG CTCAGCTGCT GCTGGATGCC GGGTATCACG CCATCTGGCA TGGACAAAAG
AGTTGGAACG GGGTGGCTAT CCTATCCCGG TACGCTGAGA TCAAGGAAAC CCGGCGGGGC
TTAGAAGGAG ATCCTGAAGA TTTGCACAGC CGATATATTG AGGCATTTAT AAATGGCGTT
GTGATTGGTT GTTTATACCT GCCAAACGGC AACCCCTTTC CCGGACCTAA GTTTGAGTAT
AAACTCAACT GGATCAAAAG GCTTACTAAA CATGCAGCAA AGCTGAATGC ATTTGGTTTG
CCTGTAGCCC TGGTTGGCGA CTACAACATT ATACCCACTG ATCTGGACAC GTATAAGCCA
GAAAAATACC TGGAAAATGC ATTGTTCCGT CCCGAAGCGC GAAAATTATG GACTGCACTT
TTAAAGCAAG GCTGGACCGA TGCCTTTAGA AAGCTTTATC CCAAGGATCG CATTTATACT
TTTTGGGATT ACCTGCGCAA TGCCTATCAT CGTGATGCTG GCCTGCGGCT CGATCACTTT
TTGCTGAATG ACAAATTGGT AGACAGGCTG GACGCGGCTG GTGTTGACAA ACATGTACGC
GGCTGGGACC ATTCCAGCGA CCACGCACCG GTATGGGTTG TCCTAAAGGA TCATCTCCCC
GATCAGGCGA AGTGA
|
|---|
| Protein sequence | MKIASYNING INARLDNLLR WLKEARPDVV CLQELKAPDN RFPAQLLLDA GYHAIWHGQK
SWNGVAILSR YAEIKETRRG LEGDPEDLHS RYIEAFINGV VIGCLYLPNG NPFPGPKFEY
KLNWIKRLTK HAAKLNAFGL PVALVGDYNI IPTDLDTYKP EKYLENALFR PEARKLWTAL
LKQGWTDAFR KLYPKDRIYT FWDYLRNAYH RDAGLRLDHF LLNDKLVDRL DAAGVDKHVR
GWDHSSDHAP VWVVLKDHLP DQAK
|
|---|
| |