Gene Phep_0862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0862 
Symbol 
ID8251956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1015051 
End bp1017009 
Gene Length1959 bp 
Protein Length652 aa 
Translation table11 
GC content43% 
IMG OID644934517 
ProductDNA gyrase, B subunit 
Protein accessionYP_003091146 
Protein GI255530774 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00557988 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGAAG AAAAAGATCC AAAGTCAAAT TATTCGGCAG ATAATATACA GGTATTAGAA 
GGTTTGGAAG CGGTGCGTAA GCGCCCTTCG ATGTATATAG GAGATACCGG AATTAAAGGT
TTGCACCACC TGGTGTATGA GGTTGTAGAC AACTCTATAG ATGAAGCACT GGCAGGACAT
GCTGATACCA TTTATGTAAA TATTTTAAAA GATAACTCAA TCAGGGTTGA AGATAACGGA
CGTGGTATCC CTACCGGGAT CAACACCAAG GAACAAAAGT CGGCTCTTGA AATTGTAATG
ACCGTATTAC ATGCCGGTGG TAAATTTGAT AAGGATACTT ATAAAGTATC CGGCGGATTG
CACGGTGTAG GGGTAAGTTG CGTAAATGCC TTATCTACCC ATTTAAAAGC CGAAGTTCAT
CGTGAAGGAA AGATCTGGGT ACAGGAATAC AATATCGGTA AACCACTCTA TGAGGTAAAA
TCTATAGGTG ACACCGATAA ACTCGGTACC ATTATAACAT TCACTCCCGA CCCAACCATC
TTTACCCAAA CAACAGAATA CCGTTATGAT ACACTGGCTT CAAGATTAAG AGAGCTTTCT
TTCCTGAATA AAGGTATCAA ACTTACGCTG ACTGACGAGC GTGAAACCTT GGAAAACGGC
GAGTTTCTTT CCGAACTTTT CCATTCCGAA GGCGGCTTAA AAGAATTTGT CCAGTTTCTG
GATGGTACAA GACCATCTCT GATTCCTGAG CCTATTTATG TTGAGGGCAT AAAAAATGGT
ATCCCAGTAG AGCTTGCCCT GCAATACAAT GACAGTTATT CCGAAAATGT GCACTCTTAT
GTGAACAACA TCAATACACA TGAAGGCGGT ACACATATTG CTGGTTTTAG AAGAGGCTTA
ACCAGAACAT TAAAAGCTTA TGCCGATAAA TCAGGCCTGC TGAAGAATGT GAAGTTTGAG
ATTACCGGTG ATGACTTTAG GGAAGGCTTA ACCGCAGTAA TTTCGGTTAA AGTACAGGAA
CCTCAGTTTG AAGGGCAAAC CAAAACCAAG CTGGGCAACT CTGAAGTGAT GGGGGCAGTT
GATATTGCCG TTGGTGAAGC TTTGGGTATT TATCTGGAAG AGTATCCTAA AGAGGCCAGA
ATGATCGTTA ACAAGGTTAT TCTTGCCGCT ACAGCACGTG CAGCGGCCCG TAAGGCCCGC
GAAATGGTAC AACGTAAAAG TGTAATGGGT GGTTCGGGCT TACCAGGTAA GCTGGCCGAC
TGTTCTGATA GTGATCCGGA AAAATGTGAA CTCTACCTGG TAGAGGGTGA CTCGGCCGGT
GGTACTGCCA AACAAGGGCG CGACCGTAAC TTCCAGGCTA TATTGCCTTT GAAAGGTAAA
ATCCTGAACG TAGAAAAGGC AATGGAGCAT AAGATCTATG AAAATGACGA GATCAAAAAT
ATGTTCACGG CACTGGGTGT GAGTATTGGT ACTGAAGAGG ACGATAAGGC TTTAAATTTA
GCCAAGCTGC GCTACCACAA GATTGTGATC ATGACGGATG CTGATATTGA CGGCTCTCAC
ATTACTACGC TTATTTTAAC CTTCTTCTTC CGGTATATGA AAGCCCTGAT TGAAGCAGGT
TATGTATATA TTGCTGCACC ACCGCTTTAC CAGGTTAAAA AAGGTAAGGA ATTTGAATAT
TGCTGGAACG ATAAGCAGCG CGATGACGCT GTACAGCGTT TAAAGGGTGC AGGAAAGGAA
GAAAGTGTGC ACATCCAACG TTATAAAGGT TTGGGAGAGA TGAATGCAGA ACAATTGTGG
GATACTACCT TAAATCCGGC TACGCGTACA TTAATGCAGG CTACAATTGA AAATGCTGCT
GAGTGTGATC ATACTTTCTC TATGCTGATG GGGGACGAAG TTGCACCACG CAGGGATTTC
ATTGAAAGAA ATGCGAAGTA TGCGAAGATT GATGCTTAG
 
Protein sequence
MSEEKDPKSN YSADNIQVLE GLEAVRKRPS MYIGDTGIKG LHHLVYEVVD NSIDEALAGH 
ADTIYVNILK DNSIRVEDNG RGIPTGINTK EQKSALEIVM TVLHAGGKFD KDTYKVSGGL
HGVGVSCVNA LSTHLKAEVH REGKIWVQEY NIGKPLYEVK SIGDTDKLGT IITFTPDPTI
FTQTTEYRYD TLASRLRELS FLNKGIKLTL TDERETLENG EFLSELFHSE GGLKEFVQFL
DGTRPSLIPE PIYVEGIKNG IPVELALQYN DSYSENVHSY VNNINTHEGG THIAGFRRGL
TRTLKAYADK SGLLKNVKFE ITGDDFREGL TAVISVKVQE PQFEGQTKTK LGNSEVMGAV
DIAVGEALGI YLEEYPKEAR MIVNKVILAA TARAAARKAR EMVQRKSVMG GSGLPGKLAD
CSDSDPEKCE LYLVEGDSAG GTAKQGRDRN FQAILPLKGK ILNVEKAMEH KIYENDEIKN
MFTALGVSIG TEEDDKALNL AKLRYHKIVI MTDADIDGSH ITTLILTFFF RYMKALIEAG
YVYIAAPPLY QVKKGKEFEY CWNDKQRDDA VQRLKGAGKE ESVHIQRYKG LGEMNAEQLW
DTTLNPATRT LMQATIENAA ECDHTFSMLM GDEVAPRRDF IERNAKYAKI DA