Gene Phep_0852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0852 
SymbolmiaA 
ID8251946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1006506 
End bp1007423 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content42% 
IMG OID644934507 
ProducttRNA delta(2)-isopentenylpyrophosphate transferase 
Protein accessionYP_003091136 
Protein GI255530764 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase 
TIGRFAM ID[TIGR00174] tRNA isopentenyltransferase (miaA) 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0515522 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGCGA TGGCACAAAA TAAAACATTA ATTGTAATTG TTGGCCCTAC AGGAATAGGA 
AAAACTGCGC TGGCCATTTC CCTGGCCAGG CATTTTTCCA CTGAAATTAT ATCGGCCGAT
TCGAGACAAT TTTTTAAAGA GATGGAAATT GGCACAGCTA AACCTTCAGC CGAAGAACTT
AGTGCAGCAC CCCATCATTT TATCAATTCC CATAGTATAA AAACCTTTTT CAGTACTGGT
GATTTTGAGG TACAGGCAAT TGAGCTCATC AGTCAGTTAT TTAAAGAACA TGATTTGTTG
ATCATGGTAG GAGGCTCTGG TCTTTATATT GATGCCGTAT GTAAAGGACT GGATGATTTG
CCTGAAACCG ACCTCAACAT CAGGGAACAA CTGAACCAGC AATTGGCAGC AGAAGGCCTG
GAATCTATAA AAAAAATGCT GAGCGAAGCC GATCCTGAAT ACTATCAGAA AGTCGACCAG
TCAAACCCCC AGCGTATCAT CAGGGGCCTG GAGTTTTACC TGTCAACAGG GACAAAACTA
TCTGCCCATC TCACCAACAG TAAAAAAGTC AGACCTTTTA ACATCATAAA GATCGGTTTG
AATATGCAGC GTCCCGAACT TTATCAGCGG ATCAACCAAC GTGTAGATCA GATGATGGAA
ATGGGTCTCC TGGATGAAGT GAAAAGTTTA CTGCCGTACA GAAAATATAA TGCACTCCAC
ACAGTTGGTT ATACTGAACT GTTCTCCTAC CTGGATGGTG AAATCACTTT ACAGCAAGCT
ATAGACCATA TCAAACAAAA TACACGCCGG TTTGCTAAAC GACAGCTCAC CTGGTTTAGA
AGAGATGACA GCACTGCCTG GTTTCAACCC GGACAGGGTG CTGCTGTCAT CAAATATATC
ATAGAAAATA AAAATTAA
 
Protein sequence
MPAMAQNKTL IVIVGPTGIG KTALAISLAR HFSTEIISAD SRQFFKEMEI GTAKPSAEEL 
SAAPHHFINS HSIKTFFSTG DFEVQAIELI SQLFKEHDLL IMVGGSGLYI DAVCKGLDDL
PETDLNIREQ LNQQLAAEGL ESIKKMLSEA DPEYYQKVDQ SNPQRIIRGL EFYLSTGTKL
SAHLTNSKKV RPFNIIKIGL NMQRPELYQR INQRVDQMME MGLLDEVKSL LPYRKYNALH
TVGYTELFSY LDGEITLQQA IDHIKQNTRR FAKRQLTWFR RDDSTAWFQP GQGAAVIKYI
IENKN