| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0849 |
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| Symbol | |
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| ID | 8251943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 997921 |
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| End bp | 1001724 |
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| Gene Length | 3804 bp |
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| Protein Length | 1267 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644934504 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_003091133 |
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| Protein GI | 255530761 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.645199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.132686 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCAAATA AAGTCGACCA AAGAGTAAAT TTTGCACGTA GTAAGCATAT TATAGATTAC
CCGGATTTTC TAGATGTGCA GTTGCAATCA TTCAGAGAAT TTTTTCAGAT AGAAACCACT
TCGGATAACC GTCATACAGA GGGTTTATTT AAGGTATTTG CTGAAAATTT TCCAATCACA
GATTCCAGAA ACATCTTTGT TTTGGAATTC CTTGATTATT TTATTGACCC GCCGCGTTAT
GATATACCTG AGTGTATTGA CCGTGGGTTA ACTTATAGTG TTCCGTTGAA AGCTAAATTA
AAGCTTTCGT GTAATGATGC TGAGCACGAA GATTTTGAAA CCATTATTCA GGATGTGTAT
TTAGGGACCA TACCTTATAT GACCCCAAAA GGTACATTTG TGATTAACGG AGCAGAGCGT
GTAATTGTTT CACAATTGCA CAGGTCGCCA GGTGTGTTCT TCGGCCAAAG CCGCCACACA
AATGGAACTA AATTGTACTC AGCCCGTGTA ATTCCTTTTA AGGGTTCATG GATCGAGTTT
GCTACAGACG TAAACAACGT GATGTATGCT TACATTGATC GTAAGAAAAA GTTCCCGGTT
ACCACCTTAT TGCGTGCTAT TGGTTACGAT TCTGATAAGG ACATTTTGGA GCTGTTCGAT
CTTGCCGATG AGGTAAAGGT CAGCAAATCC GGCTTGAAAA AATATATCGG GCGTAAGCTT
GCAGCAAGAG TATTGAGGAA GTGGGTAGAG GATTTTGTAG ATGAAGATAC TGGTGAGGTA
GTTTCAATAG ATCGTAATGA AGTGATCTTA GACAGGGATA CTGTATTGGA AGACGACCAC
ATTGATATGA TCATTGATGC TGGTGTGAAG ACGATCATCT TATCTAAGGA TGATGGTGCT
AGCCAGGCTG ATTATACCAT TATATATAAT ACTTTACAAA AGGATACATC TAACTCTGAA
AAAGAGGCTG TTGAAAACAT CTATCGTGCT TTGCGTAATG CAGAACCACC TGATGAGGAA
ACTGCAAGAG GTATCATTGA GCGTTTGTTC TTTTCGGATA AACGTTATGA CTTGGGTGAT
GTGGGCAGGT ACCGCATTAA CCGTAAGTTG AAAATGGATA CTCCCGATCA TGTAAAAGTT
TTAACGAAGG CTGATATCAT TGCCATTGTT AAGTACCTGA TCAAACTGAT CAACTCTAAA
GAAGAGGTGG ATGATATTGA TCACTTGTCG AACCGTCGTG TTCGTACAGT AGGTGAGCAA
TTGTACGCTC AGTTTGGTGT TGGTCTGGCA CGTATGGCAA GAACCATCCG TGAGCGTATG
AACATCCGAG ATAACGAGGT ATTTACACCA ACTGATCTGA TCAATGCCCG TACTTTATCA
TCGGTGATCA ATTCATTTTT TGGTACAAAC CAGTTGTCAC AGTTCATGGA CCAGACGAAT
CCTTTGGCAG AGATTACGCA CAAACGTCGT TTGTCGGCCT TAGGCCCAGG TGGTCTGTCG
CGTGAGCGTG CAGGTTTCGA GGTACGTGAC GTTCACTATA CGCACTATGG CCGTTTGTGT
ACAATTGAAA CGCCAGAGGG ACCAAACATT GGTTTGATTT CTTCTTTGTG TGTTCATGCG
AAGATCAATA ATTTAGGTTT CATTGAAACT CCTTATAAGA AAGTAGAGAA CGGTATTGTT
TCGGTTGATG AACCGGTGAT TTACTTATCT GCTGAGGATG AAGATGGTAA AACCATTGCG
CAGGCAAATG CAGCTTATGA TGATAAAGGT AATTTCACCA CTTCACGTGT AAAAGCACGT
TATGAAGGTG ACTTCCCGGT TATTGAACCA GAGAAACTGG ACTTAATGGA CGTGGCGCCG
AATCAGATTA CTTCAATTGC AGCTTCCTTG ATTCCTTTCC TTGAGCATGA TGATGCGAAC
AGGGCCTTGA TGGGATCGAA CATGCAACGT CAGGCCGTAC CATTGTTACG TCCTGAGGCT
CCTATCGTTG GTACAGGTTT GGAAGGTCGG GTAGCCCGCG ATTCAAGAAC GCTGATTAAC
GCTGAGGGTG ACGGTGTGGT GGAATACGTT GATGCAAATG AGATCACCAT TAAATATGTG
CGTAATGACA GTGATCGTTT AGTTTCTTTT GAAGGTGACA GTAAAACCTA TAAGTTAATC
AAATTCAAAA AAACCAATCA GAATACCTGT ATCAATTTAA AGCCAATTGT TAAAAAAGGC
CAGAAGGTTG TAAAAGGACA GGTGTTGTGT GAAGGTTATG CTACTGAAAA TGGTGAGTTG
GCATTGGGAA GAAACTTAAA AGTTGCTTTC ATGCCTTGGC AGGGATATAA CTTTGAGGAT
GCGATTGTAA TCAGTGAGCG TATTGTCCGT GAAGATATCT TTACTTCTTT ACACATCGAA
GAGTTTGAGC TGGAAGTACG CGATACCAAA CGTGGGGAAG AGGAATTGAC TCCAGATATT
CCTAACGTTT CTGAGGAAGC AACTAAGGAT CTTGACGAGA ACGGTATCAT CCGTATCGGT
GCTGAAGTGA AAGAAGGTGA TATCCTTATT GGCAAGATTA CCCCTAAGGG AGAATCTGAT
CCTTCACCGG AAGAGAAGTT GTTGCGTGCT ATATTTGGAG ATAAGGCAGG AGATGTTAAA
GATGCATCTT TGAAAACCCC TCCATCTATC AGGGGTGTGG TAATTGATAC CAAATTGTTC
TCAAGAGCTA AGAAAACTAC TAAAGCAGAA GAAAAATCTG CAATAGAAAA ACTAGATAAG
AAATATGATC TGGCTGTTTT AAACCTTAAG AATGAGCTTG TAGATAAATT GTTCCAGATT
GTGAACGGTA AAACGTCGCA GGGGGTATAC AATGTTTATA AAGAGCTATT GTTCCCTAAA
GGTGCGAAAT TTACGCAGAA AAGCTTATCA GACCTTGAAT ACGCACACAT CAATCCATAC
AAATGGACTA CTGATGACGA CAAGAATGAG CAGATCAAAA TGTTGTTGCA CAACTACGGT
ATTCGTGTAA ACGAGGAGCT GGGTGCTTAC AAACGTGATA AATTTGCCAT TAGTGTTGGT
GATGAACTTC CATCTGGTAT TGTACAGATG GCCAAGGTTT ATGTTGCCAA GAAACGTAAG
TTAAAAGTAG GGGATAAGAT GGCCGGACGT CACGGTAACA AGGGTATTGT AGCCCGTATT
GTTCGTGATG AAGATATGCC ATTCCTTGAA GACGGAACAC CTGTTGATAT TGTGTTGAAC
CCACTGGGTG TACCTTCACG TATGAACTTA GGTCAGATCT ATGAAACTGT ACTGGCATGG
GCAGGTAAAG AATTGGGTGT AAAATTTGCT ACTCCGATTT TTGATGGTGC CAAACATGAC
GAAGTAGAGG ATTGGATCGC TAAGGCAGGA GTACCTGCTT CGGGCAGAAC TTATTTACAT
AATGGTTTAA CGGGTGAGAA ATTTGACCAG CCAACAACTG TAGGTATCAT CTACATGTTG
AAATTGGGGC ACATGGTTGA TGATAAGATG CACGCCCGTT CAATCGGACC ATACTCATTG
ATTACACAGC AGCCATTGGG TGGTAAAGCC CAGTTTGGTG GTCAGCGTTT TGGTGAGATG
GAGGTTTGGG CATTGGAAGC ATTTGGTGCG GCCAATATCC TGCAAGAGAT CTTAACCGTT
AAGTCGGATG ATGTGATCGG AAGGGCCAAA ACCTATGAAG CGATTGTAAA AGGCGAGAAC
CTTCCTACTC CAGGTGTACC GGAATCATTT AATGTATTGG TACATGAGTT ACGTGGATTA
GGTTTAGATA TTACGTTAGA CTAA
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| Protein sequence | MANKVDQRVN FARSKHIIDY PDFLDVQLQS FREFFQIETT SDNRHTEGLF KVFAENFPIT
DSRNIFVLEF LDYFIDPPRY DIPECIDRGL TYSVPLKAKL KLSCNDAEHE DFETIIQDVY
LGTIPYMTPK GTFVINGAER VIVSQLHRSP GVFFGQSRHT NGTKLYSARV IPFKGSWIEF
ATDVNNVMYA YIDRKKKFPV TTLLRAIGYD SDKDILELFD LADEVKVSKS GLKKYIGRKL
AARVLRKWVE DFVDEDTGEV VSIDRNEVIL DRDTVLEDDH IDMIIDAGVK TIILSKDDGA
SQADYTIIYN TLQKDTSNSE KEAVENIYRA LRNAEPPDEE TARGIIERLF FSDKRYDLGD
VGRYRINRKL KMDTPDHVKV LTKADIIAIV KYLIKLINSK EEVDDIDHLS NRRVRTVGEQ
LYAQFGVGLA RMARTIRERM NIRDNEVFTP TDLINARTLS SVINSFFGTN QLSQFMDQTN
PLAEITHKRR LSALGPGGLS RERAGFEVRD VHYTHYGRLC TIETPEGPNI GLISSLCVHA
KINNLGFIET PYKKVENGIV SVDEPVIYLS AEDEDGKTIA QANAAYDDKG NFTTSRVKAR
YEGDFPVIEP EKLDLMDVAP NQITSIAASL IPFLEHDDAN RALMGSNMQR QAVPLLRPEA
PIVGTGLEGR VARDSRTLIN AEGDGVVEYV DANEITIKYV RNDSDRLVSF EGDSKTYKLI
KFKKTNQNTC INLKPIVKKG QKVVKGQVLC EGYATENGEL ALGRNLKVAF MPWQGYNFED
AIVISERIVR EDIFTSLHIE EFELEVRDTK RGEEELTPDI PNVSEEATKD LDENGIIRIG
AEVKEGDILI GKITPKGESD PSPEEKLLRA IFGDKAGDVK DASLKTPPSI RGVVIDTKLF
SRAKKTTKAE EKSAIEKLDK KYDLAVLNLK NELVDKLFQI VNGKTSQGVY NVYKELLFPK
GAKFTQKSLS DLEYAHINPY KWTTDDDKNE QIKMLLHNYG IRVNEELGAY KRDKFAISVG
DELPSGIVQM AKVYVAKKRK LKVGDKMAGR HGNKGIVARI VRDEDMPFLE DGTPVDIVLN
PLGVPSRMNL GQIYETVLAW AGKELGVKFA TPIFDGAKHD EVEDWIAKAG VPASGRTYLH
NGLTGEKFDQ PTTVGIIYML KLGHMVDDKM HARSIGPYSL ITQQPLGGKA QFGGQRFGEM
EVWALEAFGA ANILQEILTV KSDDVIGRAK TYEAIVKGEN LPTPGVPESF NVLVHELRGL
GLDITLD
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