| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0498 |
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| Symbol | |
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| ID | 8251585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 594507 |
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| End bp | 595925 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644934148 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_003090784 |
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| Protein GI | 255530412 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAA ACAACAACAG GAACAGTCGG GATGACAAGT CCAAACCGGG AAACCGAAGC
ACAACAGGCA AAAAACCAGA TGGAGCAGGT GCTTCATACA AGGGAAAAAG CAAGTTTGAC
GATAAAGAGG GGAAAGACAA TAAATTTGGT GACTCAAAGG ATTTTAAACC GAGAACGTCG
AGAACCCCAG GAGCATTTGG TGCTTCGAGA GGCCCAAAAG AAAGTGACAG AAAGGATTTC
AAACCAAGAG CAGGAAAAGA CGGTGATTCA AAAAGCTTCG GTTCAAGAGG CACAGGCTCT
AGAGACTTTA AACCTGGCAA CAGAGACAGC GACAACAGGG ATTTTAAACC CCGCTCTTCT
AAAGATGGCG GTTCAAGAGA AAATCCTGCC GGAGAAAGTA AACGCAGCTA TATAAAGAAA
GATAATTTTA GTACCGGAGG GGATAAACCT TTCCGGAAAT TCGATGATAA AAAAGGTCAG
AGCCCAAGAA GTACTGACAG CAGGCCCTTT AGAAAAAGGG AAGATGAGCA AGCCAAACAA
GGCTTTAAGC CATGGGAAGG CCGTCCCGAG CGGGAAGAAC GCGGAGAGCG TGGAGAGCGT
GGAGAGCGTG GCAGCCGCCA GGAACGCAAC AATACCTGGA ACGGCCCGGA AAAGGCACCT
ACCATGCGGG GCAGAAAAAA TGCCCCTGTC CAGAAAGATG ACGGCCTGAT CCGTTTAAAC
CGTTACATTT CAAATTCAGG CATCTGCTCC CGCCGTAAAG CCGATGAACT GATTGAAGCT
GGCGTAGTTT CTGTAAATGG TGAAGTGGTT TCGGAACTGG GCCACAAAAT AGACCCGGTA
AAAGATCAGG TACGCTATAA TGGCGAACTG CTGAAACGTG AAAAAAAGAT TTACGTACTG
CTCAATAAAC CTAAAGATTA TATCACCACA ACCGACGATC CACAGGAACG CCGTACAGTA
ATGCAACTGG TAGAAAAAGC CAGCCGCGAA CGCATTTATC CTGTAGGCAG GTTAGACAGG
AATACTACAG GCTTATTGCT GATGACCAAT GATGGCGACC TGGCCGATAA GCTTTCCCAT
CCTAAAAACG GAATCACCAA AATATATCAT GTAGAACTGA GCAGGAGTTT AAGCCAGGGC
GACCTGAACA AAATTCAGTT CGGATTGGAG CTGGAAGATG GGATCATTAA ACCTGATTCT
GTATCTTACG TAACCGGGGG TTCTAAGCGC GAAGTAGGTA TCCAGATCCA TAGCGGAAAA
AACAGGATTG TACGTCGTAT ATTCGAACAT CTTGGATATG ATGTGGTGAA ACTAGACCGC
GTGGTTTATG GAAACCTGAC CAAAAAAGAC CTTCCCCGTG GAAGATGGCG CTACCTGGAA
GAGCATGAGC TGATCCAGAT CAAACACCTG ATAAAGTAA
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| Protein sequence | MIKNNNRNSR DDKSKPGNRS TTGKKPDGAG ASYKGKSKFD DKEGKDNKFG DSKDFKPRTS
RTPGAFGASR GPKESDRKDF KPRAGKDGDS KSFGSRGTGS RDFKPGNRDS DNRDFKPRSS
KDGGSRENPA GESKRSYIKK DNFSTGGDKP FRKFDDKKGQ SPRSTDSRPF RKREDEQAKQ
GFKPWEGRPE REERGERGER GERGSRQERN NTWNGPEKAP TMRGRKNAPV QKDDGLIRLN
RYISNSGICS RRKADELIEA GVVSVNGEVV SELGHKIDPV KDQVRYNGEL LKREKKIYVL
LNKPKDYITT TDDPQERRTV MQLVEKASRE RIYPVGRLDR NTTGLLLMTN DGDLADKLSH
PKNGITKIYH VELSRSLSQG DLNKIQFGLE LEDGIIKPDS VSYVTGGSKR EVGIQIHSGK
NRIVRRIFEH LGYDVVKLDR VVYGNLTKKD LPRGRWRYLE EHELIQIKHL IK
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