Gene Phep_0478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0478 
Symbol 
ID8251565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp570270 
End bp572105 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content48% 
IMG OID644934128 
ProductABC transporter related 
Protein accessionYP_003090764 
Protein GI255530392 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0961856 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCAAAGC AGCTGAATGA AATAGATGCA GAATCGCTGA CTTTTAAAGC CAGGGTAGCT 
GCACTGGGCA ACCTGCCTGA ATTTTTTAAG CTGGTATGGC AAACCAGCAG ATGGATGACC
ATTTGCAATT TTTTGCTGCG CATTGCCCGT TCAATGATGC CACTGGCCAT TTTATGGGTG
GGTAAGCATA TTATTGATGA AGTGGTGCTG CTGGGCACCG GCAGGGCTGG GGTTTCCCAG
GAATTTCTCT GGAAACTGGT AGGGTTGGAG TTTGGTCTGG CCATTTTAAC AGATATTTTA
AACAGGTCTA TTAACCTGAT GGATGGCCTG CTGGGCGACC AGTTTGCCAA TTACACCTCA
GTCAGGATCA TGAAACACGC AGCAACGCTA GACCTGGACC AGTTTGAAGA TTCCGTTTTT
TACGATAAGA TGGAACGTGC CAGGCAGCAG ACAGTAGGAC GTACCGTGCT CCTGTCGCAG
GTGATGGGAC AAATCCAGGA CCTGATCACG ATGGGTTTTC TGGCAGTAGG CCTGGTGGCC
TTTAATCCCT GGCTGATCCT GTTGCTACTG GCTACCATTT TGCCTGCATT TATTGGGGAA
TCTTATTTTA ACGACAGAAG TTACGCCCTC TCGCGCAGAC GTACACCTGA ACGCAGGGAG
CTGGATTATG TGCGTTACCT GGGCGCAAGC GATGACACGG CAAAAGAAAT TAAGGTATTT
AACCTTTCAG GATTTATCAT AGACCGTTTT AAAACACTGT CAGAGAAATT TTATACAGAG
AACAGACAAT TGTCGCAACG CCGGGCAACC TGGGGAACAT TTTTTTCTTT TCTGGGTAGC
ACGGGCTATT ACCTGGCCTA TGTTTATATC ATTTATAAAA CCATTAACGG GGCAGTTACC
ATTGGTGAAC TTACGTTTTT AGCTGGTTCT TTCCGGCAAA TGCGGGGTTT AATGGAAGGG
GTGCTGCTGC GTTTCACGGC CGTTTCACAG GGTGCCATTT ACCTGAGCGA TTTCTTTGAA
TTTTTCGAGA TTGAGCCCAA GATCAGGAAA TTGTTAAATG CAAAGCCATT TCCAAATCCG
ATCAGGCTGG GTTTTGTTTT TGAAAACGTA GGCTTTCAGT ATGCCCATTC ATCCCGCTGG
GCAAACCGGC ATTTGAGTTT TACCCTTCAT CCCGGAGAAA AGCTGGCCCT GGTAGGTGAA
AACGGTTCGG GTAAAACAAC ACTCGTTAAA TTGCTGGCCC GGCTTTACGA TCCCACCGAA
GGTCGGATAT TGCTGGACGG GGTAGACCTG AAAGCATACG ACCTGGATGA ACTGCGCTTA
AATGTGGGCA TCATTTTTCA GGATTACCTG CGTTATCAGA TGACCCTTGC ACAGAACATT
GCTGCCGGGA ACATTATAGA GCAAGATAAC AGGGCATTGA TTGAATCGGC AGCGAAACAA
AGCCTTGCGG ATACCTTGAT TGAAAAGCTA CCTGCAGGTT ATGATCAGAT GCTGGGCAAG
CGTTTTGCAA ATGGGGTAGA CTTATCGGGG GGCGAATGGC AAAAGGTGGC GCTGGCCAGG
GCTTATATGA AAGACGCACA GCTGCTGATC CTTGATGAAC CTACCGCCGC CCTTGATGCC
AGGGCAGAGT ATGAAGTTTT TGAACGTTTT GCCGAATTGA CAAAAGGGAA ATCAGCAGTG
CTGATCTCCC ATCGTTTTTC TACAGTAAGG ATGGCCGACC GGATCCTGGT ACTTGATAAA
GGGCAGCTGA TCGAGATCGG TAGCCATGAA GAGCTGATCC TTAAAAAAGG CCGCTATGCA
GAGCTGTTTG AACTGCAGGC CAAAGGCTAC AGGTAA
 
Protein sequence
MAKQLNEIDA ESLTFKARVA ALGNLPEFFK LVWQTSRWMT ICNFLLRIAR SMMPLAILWV 
GKHIIDEVVL LGTGRAGVSQ EFLWKLVGLE FGLAILTDIL NRSINLMDGL LGDQFANYTS
VRIMKHAATL DLDQFEDSVF YDKMERARQQ TVGRTVLLSQ VMGQIQDLIT MGFLAVGLVA
FNPWLILLLL ATILPAFIGE SYFNDRSYAL SRRRTPERRE LDYVRYLGAS DDTAKEIKVF
NLSGFIIDRF KTLSEKFYTE NRQLSQRRAT WGTFFSFLGS TGYYLAYVYI IYKTINGAVT
IGELTFLAGS FRQMRGLMEG VLLRFTAVSQ GAIYLSDFFE FFEIEPKIRK LLNAKPFPNP
IRLGFVFENV GFQYAHSSRW ANRHLSFTLH PGEKLALVGE NGSGKTTLVK LLARLYDPTE
GRILLDGVDL KAYDLDELRL NVGIIFQDYL RYQMTLAQNI AAGNIIEQDN RALIESAAKQ
SLADTLIEKL PAGYDQMLGK RFANGVDLSG GEWQKVALAR AYMKDAQLLI LDEPTAALDA
RAEYEVFERF AELTKGKSAV LISHRFSTVR MADRILVLDK GQLIEIGSHE ELILKKGRYA
ELFELQAKGY R