| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0303 |
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| Symbol | |
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| ID | 8251388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 352569 |
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| End bp | 353180 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644933952 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003090590 |
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| Protein GI | 255530218 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000168317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCTGCCC GCGGTGTAAT TTATGATTTA GCAGGCGAGC AACAATTGTT GCAACAGATT
GCCATGGGTA ACGAAACTGC TTTTAAACTG ATTTTTGAAA CTTACCGGTC CCGCGTCTTT
ACATTTGTAG TCAATTTTAT CCATTCTACA GCAGATGCGG AAGAGATTGT TCAGGATACC
TTTCTTAGCC TCTGGCAAAA TAGAGACAGC CTGGTAAAAG TAGAGCATCC CAGAAATTAC
ATTTATACGG TAGTTCGCAA TAAAACTTTA CGTTACCTGA GTAACGTTGC CCGCGACGAA
AAAATGTTAA AAGTTGTTTG GGCAAATATG CAGGTAGAGG TTAACCCTAC CGAAGAGGCC
CTGTTAATGA GAGAAAGCAG GGCGCTGATA GACAAGGCGC TTTCTACACT GCCTGCGCAA
AAACAACAAG TATTCAGGAT GTGCCGGGAA GAGGGGATGA GCCACGAGGA CATTGCGCTT
GAAATGGGCC TGTCCAAAAG CAGGATAAAA AATATCATGG TAGAAGTATT GCGGTATATA
AAAATATTTC TCAATCAAAA TTCAGCGATT CCAGCCATCA TTCTGGCCTT TTATCTTTTT
TTTATAAAAT AA
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| Protein sequence | MAARGVIYDL AGEQQLLQQI AMGNETAFKL IFETYRSRVF TFVVNFIHST ADAEEIVQDT
FLSLWQNRDS LVKVEHPRNY IYTVVRNKTL RYLSNVARDE KMLKVVWANM QVEVNPTEEA
LLMRESRALI DKALSTLPAQ KQQVFRMCRE EGMSHEDIAL EMGLSKSRIK NIMVEVLRYI
KIFLNQNSAI PAIILAFYLF FIK
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