Gene Phep_0125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0125 
Symbol 
ID8251210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp150070 
End bp151446 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content47% 
IMG OID644933775 
ProductDNA repair protein RadA 
Protein accessionYP_003090413 
Protein GI255530041 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCTAAAA CAAAATCAGC ATATTTTTGC CAGAGCTGCG GATACGAATC AGCAAAATGG 
CTGGGCAAAT GTCCGTCCTG CAATGAGTGG AATACTTTTG TGGAAGAGGT TATTGAAAAA
GCAGCTGCTA AAGTGCCCGC CTGGAAAACA AGTACCGGTA CCCAGCGCGT TAGTAAGCCC
AACAAGGTAG ACAATATCCA GTCTATAACC GAAGAACGCA TTTTGACCGG CGATACAGAG
CTTGACCGGG TTTTGGGCGG GGGCCTTGTT GCTGGTTCTG TTATTTTGAT CGGCGGTGAG
CCTGGCATTG GCAAATCCAC TTTAATGCTG CAGCTGGCCT TAAACATTTC GGGCAAAAAG
ATTTTGTATG TATCCGGAGA GGAAAGTGAA CAGCAGATTA AAATGCGGGC AGAGCGGATC
ACTGTACAGC CCATGGCAGA TTGCTACATC CTGACAGAAA CTTCCACACA AAATATATTT
AAACAGATAG AAGAGCTTGA GCCCGATATT GTGGTTGTCG ATTCGATACA GACCCTGCAT
TCGGCACACA TAGAATCTAC CCCGGGCAGC GTGTCGCAGG TAAGGGAGTG TACGGCCGAG
TTGCTGCGTT TTGCAAAGGA GACGGATACC CCGGTATTTC TAATAGGCCA CATTACCAAG
GACGGAACGA TTGCTGGGCC CAAAATACTG GAACATATGG TGGATACCGT TTTACAATTT
GAGGGCGACA GGCACCATGT ATACCGGATA TTGCGGTCGA TAAAAAACAG GTTTGGTGCT
GCAGCCGAGC TTGGGATCTA TGCCATGCAC AGCAGCGGAT TGAGGCAGGT TTCCAACCCA
TCAGAAATAC TGCTTTCCCA GCGGGATGAA GAGCTGAGCG GAATTGCCAT ATCGGCCACT
TTAGAGGGCG CCAGACCAAT GTTGATTGAA ACACAGGCCC TGGTGAGTGC GGCAGCCTAT
GGAACCCCCC AGCGGTCCTC AAATGGCTTC GATACCAAAA GGATGAACAT GCTGCTTGCC
GTGCTGGAAA AAAGATGCGG GTTCAGATTG AGCACAAGAG ACGTATTTTT AAATATTGCC
GGCGGAATAA AGGTAGAGGA CCCGGCTATT GACCTGGCCA TCCTGGTGGC CATTATCTCT
TCTCATGAGG ATATATTTAT TTCTTCAAAA ATATGCTTTG CTGCTGAAGT TGGCCTTTCT
GGCGAGATCA GGGCGGTAAA CCGAATTGAA CAACGCATTT CTGAAGCAGA AAAGCTTGGT
TTTGAACGGA TCTTTATTTC TAATTACAAC AGGAAAGGGC TGGTAGTTGA ACGTTATAAG
ATTGAGTTGA TTGCAGTGAG CAAAATAGAA GATGTTTTCT CCCAGTTATT TGGATAA
 
Protein sequence
MAKTKSAYFC QSCGYESAKW LGKCPSCNEW NTFVEEVIEK AAAKVPAWKT STGTQRVSKP 
NKVDNIQSIT EERILTGDTE LDRVLGGGLV AGSVILIGGE PGIGKSTLML QLALNISGKK
ILYVSGEESE QQIKMRAERI TVQPMADCYI LTETSTQNIF KQIEELEPDI VVVDSIQTLH
SAHIESTPGS VSQVRECTAE LLRFAKETDT PVFLIGHITK DGTIAGPKIL EHMVDTVLQF
EGDRHHVYRI LRSIKNRFGA AAELGIYAMH SSGLRQVSNP SEILLSQRDE ELSGIAISAT
LEGARPMLIE TQALVSAAAY GTPQRSSNGF DTKRMNMLLA VLEKRCGFRL STRDVFLNIA
GGIKVEDPAI DLAILVAIIS SHEDIFISSK ICFAAEVGLS GEIRAVNRIE QRISEAEKLG
FERIFISNYN RKGLVVERYK IELIAVSKIE DVFSQLFG