Gene Phep_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0109 
Symbol 
ID8251194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp131624 
End bp133381 
Gene Length1758 bp 
Protein Length585 aa 
Translation table11 
GC content41% 
IMG OID644933759 
ProductOmpA/MotB domain protein 
Protein accessionYP_003090397 
Protein GI255530025 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.012333 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGAA CCCTGCCATT GGTATCAACC ATTTCCATAT TGCTATTAAA TCTGGGCATT 
GTACAGGCGC AATATATTTT GAAAGAAGCA GATCAGCAAT TTGACCTGTT TAATTACGAT
AAGGCAATAA ATTTATATAC ACAGGCGTAT AAAAAGAAAG CTACTTTACA CACTGCAGAG
CGCCTGGCAG AGGCTTATCA GCTGAAGAAC GATTACCTGG CCGCGGAAAG CTGGTATGCC
CTTGCTGCCA GGTTGCCAGG CAGTAAAAAT GAAAACACTT TATATTACGC AATGGCGCTG
CAGCAAAATG CTAAATACAG CGAAGCCAAA GCACAATATT TAAATTATTT TGCCAAAGAA
AACACCATTT CTTCAGTCAT AAAAAACAAT TTGCTGGCTT CCTGTGATTC TGCGGAAAAC
TGGATGAAAA ACCCGGCCCA GATCCAGGTC AATAACCTCG GTGCCCTAAA CGGGCCGCAA
TCAGACTGGG GTAGTGTAAT TTATCAGGAT GCAATGGTAT TTGCTTCTGA CAGAATAAAT
ATAGGTAAGG CGAATGTAAA AGCACCGTTT TTAAAATTTG ACGGCACTAA ATTTCCTGAT
AGAAAAATTT ATGGCTGGAC AGGAAGCGGG TACCTTAAAC TTTATACCCA ACATGGTGCT
GATAGTGTCC GGGTTTTTCC TGTTAACGCA AAAACCAATT ACCATATTGG CGCGGCAAGT
TTTACGGCCG ATGAAAATAC CATGTACTTT ACTTTGACCC GGATACCTGA AAAGCCGGGT
AGGGGAAAAG ACAACATTGC AACCATTAAT GTAGAAATTT ACAGCAGCAA AAAAAACGCT
GGAAAGTGGG AAGAAGCCAT TCCCTTTAAA TACAATAAGG CGGATGCGTA TTCGGTTGGT
GATCCGTTCA TCTCCAAAGA CGGGAACAGG CTTTATTTTG TTTCAGATAT GCCGGGTGGT
TTGGGCGGAA CAGATATTTA CTACGTAGAA AAGCTTCAAT CTGGCGAATG GGGAGATGCG
GTAAATTTGC AGGAAGTAAA TTCTGCCGGA AATGAGCGCT GCCCTTTTGT AGCCAATAAA
AATACATTTT ACTTTTCTTC AGATGGAAGG ATAGGAATGG GTGGCCTGGA TATTTTTAGG
CTTTCAAAAA ATGCCACAGG AGAAAATAAG ATCGAAAATT TAGGATTCCC GGTTAATTCC
CCCCAAGATG ATTTTGCATT TAATACCGAT GTAAATACCG GGATATCCTA TTTTTCTTCA
AATCGTTTTG GTGGCAAGGG TAGTGATGAT ATCTACAGTA TGGAACGCCA GGTAACCAAC
AGTCCCGTCC TTATCGCAAA AGAACCAACA GATCCCGGAA CCCTTAATAA GAAGGAGTTC
CTTCAAACAA AGGAAAACAA CAAGCCCATC AGACTGGAAA ACATCTATTA CGACTTCAAT
AAATGGGACA TAAGGGCCGA TGCTGCTGCG GAACTGGAAA AACTGGTGCA GATCATGAAA
GACAATTCCA GGATCTGGAT TGAACTGGGC TCACATACCG ACAGCAGGGG AAACGATGCC
TATAATTTTA CCTTATCGCA AAAAAGGGCC GAATCTGCTG TTACTTACAT GATTTCAAGG
GGAATAGAGA AAAATAGGAT AGAAGCCAGA GGATATGGGG AAACGCTATT GTTAAACCGT
TGTGCAAATG GTATAAAATG CACTGAAGAG GAGCACCAGT TAAACAGAAG AACGGAATTT
AAAATAACAG CCTGGTAA
 
Protein sequence
MKRTLPLVST ISILLLNLGI VQAQYILKEA DQQFDLFNYD KAINLYTQAY KKKATLHTAE 
RLAEAYQLKN DYLAAESWYA LAARLPGSKN ENTLYYAMAL QQNAKYSEAK AQYLNYFAKE
NTISSVIKNN LLASCDSAEN WMKNPAQIQV NNLGALNGPQ SDWGSVIYQD AMVFASDRIN
IGKANVKAPF LKFDGTKFPD RKIYGWTGSG YLKLYTQHGA DSVRVFPVNA KTNYHIGAAS
FTADENTMYF TLTRIPEKPG RGKDNIATIN VEIYSSKKNA GKWEEAIPFK YNKADAYSVG
DPFISKDGNR LYFVSDMPGG LGGTDIYYVE KLQSGEWGDA VNLQEVNSAG NERCPFVANK
NTFYFSSDGR IGMGGLDIFR LSKNATGENK IENLGFPVNS PQDDFAFNTD VNTGISYFSS
NRFGGKGSDD IYSMERQVTN SPVLIAKEPT DPGTLNKKEF LQTKENNKPI RLENIYYDFN
KWDIRADAAA ELEKLVQIMK DNSRIWIELG SHTDSRGNDA YNFTLSQKRA ESAVTYMISR
GIEKNRIEAR GYGETLLLNR CANGIKCTEE EHQLNRRTEF KITAW