Gene Phep_0029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0029 
Symbol 
ID8251113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp33164 
End bp33853 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content43% 
IMG OID644933678 
Productprotein of unknown function DUF162 
Protein accessionYP_003090317 
Protein GI255529945 
COG category[S] Function unknown 
COG ID[COG1556] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.738112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.18947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCTGC CGTTTCTTTA TAGAACGGCA GCAAATCCAT TACCTATGCA AGAAAACATT 
TCCTCAAAAG AGCTCATGCT AAAAAAGATA AGAAAAGCCC TTCTGGAAAG AAGAGACAAC
CCTTATCCCA ACTTAGAAGA CGGCCCCCTT TACGCTGAAA ATACAGAATA TCCCGAGGTG
TTGTTTGCAG AACAACTTAC CGCGGTCTCC GGAAATTTTA TTTACTGTGA AAACGGAATA
GAATTCATTG AAAATATCCT TCAGCTGGCC GAAAAGTTTA ACTGGAGAAA AATATACTGC
TGGGAACCCG AACTCCAGGA ATTGCTTTCC ACCTACGAAT TCCCTTTTTA TCAGACCGAC
AAGGATTTTG AAATGGCCGA AGCAGGCATT ACCCTGTGTG AAGCCTTAAT TGCCCGTAAT
GGATCTGTAA TGGTCTCCAA TCAGAATGCA GCCGGCCGAA GGTTAAGTAT TTTTCCCCAT
CACCATATCG TTATTGCCCG TACCGGCCAA CTGGTAATGG ATCTGAAAGA TGCTTTTAAA
CTGATCCGCG ACAAATACGG CAGCCAGATT CCCTCTATGA TCAGCACCAT TACCGGACCA
AGCCGTACAG CCGATATTGA GAAGACTTTA GTGCTGGGTG CACACGGACC TAAAGAATTA
TTTGTATTTT TAATCGACGA TTTTTCATAA
 
Protein sequence
MELPFLYRTA ANPLPMQENI SSKELMLKKI RKALLERRDN PYPNLEDGPL YAENTEYPEV 
LFAEQLTAVS GNFIYCENGI EFIENILQLA EKFNWRKIYC WEPELQELLS TYEFPFYQTD
KDFEMAEAGI TLCEALIARN GSVMVSNQNA AGRRLSIFPH HHIVIARTGQ LVMDLKDAFK
LIRDKYGSQI PSMISTITGP SRTADIEKTL VLGAHGPKEL FVFLIDDFS