Gene Dfer_5338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5338 
Symbol 
ID8228949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6449442 
End bp6450971 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content52% 
IMG OID644933183 
Producttype I phosphodiesterase/nucleotide pyrophosphatase 
Protein accessionYP_003089696 
Protein GI255039075 
COG category[R] General function prediction only 
COG ID[COG1524] Uncharacterized proteins of the AP superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.935168 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCTT ACTTTTACAC AATAATGACG GGTATTTTGC TGATTGTGAA CAATTTTGCT 
CAGGCGCAGG AAAGCAACCC GCGCTTCAAG ACCAGGACAT TGATTGTTTT CTTCGACGGT
CTGCGACCGG ATTACATTAC CGAAGCACAA ATGCCCAACC TGTTCGCCTT CCAAAAAACT
GCGGCGTGGG GCAAGCACCA TCACAGCGTT TTTCCGACGG TTACGCGTGT CAATTCCGCG
TCTTATGCCA CCGGCTCGTA CCCCGGCACA CACGGATTGC TCGGTAATGC GATTTACATC
CCGGAAGTAG CGGCCAATAA GCCGATCGGC ACCGCCTATG CCGATCTGAA CAAGATTCCC
GCCGCGACTT CCGGCCCGAT CCTCACGGCC AAATCGCTCG GCGAAGTGCT GGCGGATGCG
GGGCAGAAGA TGATGGTTTT CAGTTCCGGA ACGACCGGTC AGGCATTCCT CCAAAATCAC
ACCGTGAACG GCGCCGTGGT AAATCCGGAC CTGATTTTGC CGGAAGCATT CAAAAAGCAG
GTTTTGGAAG AAATTGGTCT GGTTAGCCAG GGAGCCGATG AGGAATTCGG ACGCCATAAA
TGGATCACTG ATGCATTGCT GAAATACGGT TTGGCAAAAG ACGGCCCGCT CGTGAATGCC
ATCTGGTTTT CGGACCCGGA CGGCGCGGCG CACGAGCACG GAATCGGGTC AGAACAGGCT
GTGAAGGCGA TTAAATATGT GGATGGCCAA TTCGGCAGAA TCCTGGCCGC ATTGCAGGCA
AAAGGTGCCG GAGAGCCGTA TAACATCATC ATATCTACCG ACCACGGCTT TGTGACCCAC
AAGGAAAAGC CGGGGCTAGC CGATTTTCTG ATCCGCGAAG GTTTCAAGAA GGACAAGGAA
TCCGACGATG TAGTGGTTGC CGAAGGCGCG ATTTATGTCA AAAATCACGA CGAAAAGACC
ATCTCCAACA TCGTAGCTGC ATTGCACCAG CAGGAATGGA CAGGCGCAGT TTTCACAAAG
GGGATTAAAA AAGGAAATAC TCAGGGCCGT GTGAAAGGAA CACTCTCCTT TGACCTGATA
CATTACAACC ATCCCAAACG CTCCGGCGAC ATTCTCGTGG CGCCCAATTG GAATGATGCC
AAAAATGACA AAGGTTACGC CGGTACCGAT TATGCAGGCG GTGTCGCGGG GCATGGTGGT
GCAAGTCCCT ATGAAATCAA TATCGCATTG CTGGCTACGG GCCCCGATTT CAAGCAGGGT
GCAATGACAG AATTGCCTAC CTCGAATGTT GATATTGTCC CTACAATCCT CAATATCTAC
AACTTGCCCC AGCCGCCGGC TATGGGTGGC CGGGCGGTTA TCGAGCTTTT GAAGAGGCCG
GGGAAAGGGC AGGGCGTATC CAGAAAGCAG CTTGTCAAAA CCGAAGCGAC CTATCCGTGG
GGTACTTATA AATTATCGGC GGAAATGTCT GTTTTAGGTG AGTATCAGTA TTTCAATTAT
GCCAAAACAG AAAGACTACC GGTACGCTGA
 
Protein sequence
MKAYFYTIMT GILLIVNNFA QAQESNPRFK TRTLIVFFDG LRPDYITEAQ MPNLFAFQKT 
AAWGKHHHSV FPTVTRVNSA SYATGSYPGT HGLLGNAIYI PEVAANKPIG TAYADLNKIP
AATSGPILTA KSLGEVLADA GQKMMVFSSG TTGQAFLQNH TVNGAVVNPD LILPEAFKKQ
VLEEIGLVSQ GADEEFGRHK WITDALLKYG LAKDGPLVNA IWFSDPDGAA HEHGIGSEQA
VKAIKYVDGQ FGRILAALQA KGAGEPYNII ISTDHGFVTH KEKPGLADFL IREGFKKDKE
SDDVVVAEGA IYVKNHDEKT ISNIVAALHQ QEWTGAVFTK GIKKGNTQGR VKGTLSFDLI
HYNHPKRSGD ILVAPNWNDA KNDKGYAGTD YAGGVAGHGG ASPYEINIAL LATGPDFKQG
AMTELPTSNV DIVPTILNIY NLPQPPAMGG RAVIELLKRP GKGQGVSRKQ LVKTEATYPW
GTYKLSAEMS VLGEYQYFNY AKTERLPVR