| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5089 |
|---|
| Symbol | |
|---|
| ID | 8228696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6146322 |
|---|
| End bp | 6147803 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644932937 |
|---|
| Product | carbohydrate kinase, YjeF related protein |
|---|
| Protein accession | YP_003089454 |
|---|
| Protein GI | 255038833 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000000420091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.19658 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT TCAACGTAGA ACAAATCCGG GCATTGGATG CCCACACGAT CGCACACGAA
CCCATTGCCT CCATCGACCT GATGGAACGC GCTTCACAAG CATTTGTGCG CTGCTTTTGC
AATCAATATG TCAATACCCG CCCGGTTGCC GTCTTTTGCG GCAAGGGAAA CAATGGCGGC
GACGGCCTCG CGATCGCCCG GCTGCTGAGT GGTTCGGGCT ACGATGTGCA GGTTTTTATC
GTGGAATATA CATTGCACGC GACCGACGAT TTCCGGCAAA ACTTGTCACG GCTCGGCAAC
CATCTGACGC CCCGGCGCAT TCATTCGGAG AACGATCTTC CGCAGCTGCC CAAACAGGTC
GTTTGCATCG ACGCGCTCCT CGGCTCCGGC CTCTCGCGCC CGGTGGACGG GCTGCTCGCC
ATCGTAATCG GGCATTTGAA TGCATTACCC AACAGGATTG TGGCCGTAGA CGTTGCAAGC
GGCCTCTACA CCGACCAGCC GAACGGCCCT TCCGACGTCA TCATCAAGCC CAGGTACACC
ATTACGTTCC AGCTACCAAA ACTCGCCTTT ATGCTCCCCC AAAACGCGGA GTATGTGGGT
GAATGGCATG TGGTGGACAT CGGCCTGAAT GCCGGTTACA TCGCGGAAAC CAATACGCCT
TATCACTTTA CGGACAAGCC GGAAGCCGAA AAACGCATTG TTCCGAGGCA AAAATTCTCG
CACAAAGGCA CATTCGGGCA TGCGGTACTC ATTGCGGGGA GTTTTGGAAA AATGGGCGCG
GCGGTGCTCT CGGGTCGCGC TTGCCTGCGC TCGGGCGTCG GCCTGCTTAC GATGCACGTA
CCTGCATGCG GCTACGCGAT TGCCCAGATT TCCGTTCCCG AAGCCATGAC GACCGTTGAT
GATACGGAAA AATACATCAG TAAATCTCCC GACCTCAATT CGGCTACTGC CATCGGTATT
GGTCCGGGCA TCGGCCAGGA CCCTGCCACG GTGAAAGCAT TGGAAAAGGT GCTGGAAAAA
GCGAAAGTAC CTGTTATCGT CGATGCGGAT GCACTGAACA TTCTCTCAAC CAACCGGCAT
TTGCTTTTCA AATTGCCGGC GAACACTATT CTCACGCCGC ACCCGAAGGA ATTTCAGCGG
CTCGCTGGGG AAAGCAGCAA TGAATTCGAG CGATTGGAGA AAGCGAGGGC GTTTTCGTCC
AAATACAAAG TGATTATTTG CTTAAAGGGC GCCAACACCG CCGTGGTACT TCCGAATGGC
GAAGTGCATT TCAACTCAAC CGGCAACCCG GGCATGGCCA CCGGCGGCAC AGGCGACGTC
CTCACGGGCA TCATCACCAG CCTGCTCGCC CAAAAATACG ACCCCGCCGA CGCCGCCATT
CTGGGCGTGT ACCAGCACGG CCTCGCCGGC GACCGCGCCG CCGAAGCCCG CGGCCAAACC
GCGCTGATCG CATCGGACGT GATCGAGCAT TTGGGTTGGT AA
|
|---|
| Protein sequence | MKIFNVEQIR ALDAHTIAHE PIASIDLMER ASQAFVRCFC NQYVNTRPVA VFCGKGNNGG
DGLAIARLLS GSGYDVQVFI VEYTLHATDD FRQNLSRLGN HLTPRRIHSE NDLPQLPKQV
VCIDALLGSG LSRPVDGLLA IVIGHLNALP NRIVAVDVAS GLYTDQPNGP SDVIIKPRYT
ITFQLPKLAF MLPQNAEYVG EWHVVDIGLN AGYIAETNTP YHFTDKPEAE KRIVPRQKFS
HKGTFGHAVL IAGSFGKMGA AVLSGRACLR SGVGLLTMHV PACGYAIAQI SVPEAMTTVD
DTEKYISKSP DLNSATAIGI GPGIGQDPAT VKALEKVLEK AKVPVIVDAD ALNILSTNRH
LLFKLPANTI LTPHPKEFQR LAGESSNEFE RLEKARAFSS KYKVIICLKG ANTAVVLPNG
EVHFNSTGNP GMATGGTGDV LTGIITSLLA QKYDPADAAI LGVYQHGLAG DRAAEARGQT
ALIASDVIEH LGW
|
|---|
| |