Gene Dfer_5072 details

Gene Information

• Locus tag: Dfer_5072
• ID: 8228679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dyadobacter fermentans DSM 18053
• Kingdom: Bacteria
• Replicon accession: NC_013037
• Strand: +
• Start bp: 6125709
• End bp: 6129086
• Gene Length: 3378 bp
• Protein Length: 1125 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644932920
• Product: OmpA-related protein
• Protein accession: YP_003089437
• Protein GI: 255038816

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.813038
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGGGA AAAGTTTACT CTTCCGGGCT TTTGCGGCCA CGTTACTACT CTGTTGTTTA 
TTCGTCAGTC CCGAGTCGAT GGGGCAGGTG ACCACTTCAT CAATCAACGG TTTCATCACT 
GACGCGGCCG GTGAATTTCT GCCGGGCGCC ACAGTCACTG CCGTGCACGA GCCTTCCGGT 
ACCACCTACG GTACCGTCAC CACCGAAGCC GGCCGTTACA CATTTCCTTC GGTCCGTATC 
GGCGGGCCTT ACAAAGTCAC CGTTTCTTAC GTGGGCTTCT CGGAGCAAAG CAGAACGAAT 
ATTTTTGCCG AACTCGGACT TGCCGCGAGC GTTAATATCA CGCTTCAAGA GGGCGGAACG 
CAGTTGGAGG AAGTATTGAT TTCTTCCAGT GCCGGACAGA TGTTCAACGG CGAGCGCACC 
GGCGCAGCTT CCTCGATCAA CACCGAGCAG CTCCGCACTT TGCCTACGGT AACCCGGAGC 
ATTTCCGACT TCACCCGCCT GAGCCCGCAA TCCAATGGCG GCAACAGCTT CGGCGGCCGC 
GACGGGCGCT ACAACAACTT CCAGGTCGAC GGTGCCAATT TCAACAACGG TTTCGGATTG 
AACGACAACC CGCTTCCGGG CGGAGGAGGT CTGTCGATCG ACGCCATTGA GGAAATCCAG 
GTGAACATTG CCCCTTACGA TGTGCGCCAG AGCGGTTTTT CCGGCGCAGG CATTAATGCC 
GTGACCCGCA GCGGTACCAA CAAATTCACC GGTTCGGCAT ACGGTTTTTT CAATAATCAG 
GATTTACAGG GAAAGAAAGT AAATGGTGAC GACATTACTC GTCCCGACGC GACAAGCCAG 
ACACTCGGTT TCAGACTGGG CGGGCCGCTG ATCAAGAATA AATTGTTTTT CTTCGTCAAT 
GCGGAACATA TCAAGAAGAC CGGCTCGGGC GTGGGTGCGG TTAACCTGTG GAAAGCATCT 
GAAAACGGCG TTGCCGATCC CGACAGGAAC ATTTCAAGAA CCAGAAGGGC CGATCTCGAA 
GCAGTACGCA ACCACCTGAT CAACCAATGG GGATATGATC CGGGCGCTTA CGAGAATTAT 
GCAAACGATA ACAGCGAAAA AACCACTTCG TTCCTTGCCC GCATCGACTG GAACATTAAT 
GCTAAAAACA AGCTGGCCGT ACGTTACAAC CAGGTTGAAA GCTCCGCTCC GTCGCTGGTG 
AATGCCAACT CGGGTGCAAA CCCGCGTACG CCGTTCGAAA CGGGCCGTGT GAGCTCGCTG 
TCGATGGCAT TCGCAAACAC GATGTACAAT ACCAAAAACA TCGTTCGCTC CATCACTGCG 
GAGTTAAATA GCGAACTGAC CCCGCGCCTT TCCAACCAGT TCCTCGCTAC ATACAGCCGT 
ATCCAGGCAA CACGCAGCTC CCCAAGCCGT GAATTCCCGA TGATCGACAT CGGCTTTGCC 
GGTGACAGCC TCAGAAACAC GGGTGTTACG ACCTATCAGA ACTACATCAG CGCAGGTTAC 
GAGCTGTTTA CATACGGTAA CGATGTTTTG AACGACAACT TCATCATCAC CAACAACCTG 
AACTATGCAG TAGGCCGCCA CAACTTTACA GCTGGCGCGA GCTTCGAAAT GCAGAAATTC 
GGTAACCGCT ACTTGCGTAA CGGAACTTCC TATTACCGCT ATGCTTCCGT GGAAGAGTTC 
CTTGCAACCG GAACTCCCAA CGAGGGAGCG CCATTGCAGT TTGCATTGAC TTATCCTTAC 
GAAGGTCAGG ACCCATATGC GCCTGTTAAA TACGGTCTGC CATCAATCTA CATCCAGGAC 
AAGTTCGATA TCTCAGACCG ATTCACACTT ACCGCGGGTA TCCGTGCTGA AATGCCGGTA 
TTCCTGAACA GCCTTACCCG CAATGCCTCG GTTGATACCC TGCAATTGCT TGGCGTAGGC 
GGCGGAATGA GAACTTACGA TACAGGCTCA TGGCCTAAAA CACGCGTGAT GCTTTCGCCG 
CGTGTCGGTT TCAGATGGGA TGCCAAAGGG GATAATTCTC TTATCCTTCG CGGAGGAACG 
GGTATTTTCG CAGGCCGTGT GCCATTTGTG TGGCTTACCA ACATGCCGTC TAACCTCGGT 
GTGATCCAGA ATACCGTTGA GCCTGGAAGC TATGCGGCTT CTGCTCCGTG GATCGGCGAT 
ATCCGTTTCC AGCCCGACAA GTACTACTGG TTGAACAACA CTCCTGCAAG TGCGCAGAAT 
GTGTTTATCA AAAACCCGCG TGCAGGTTTG CCTAGCACAT TGGCATTGGT TGACGAGAAC 
TTCAAAATGC CGCAAATCTG GCGGACGAGC TTTGGGGTAG ATTACAAAAT CCCGGGCACA 
CCGTTCGCGA TCACGGGTGA TGTGATTTAC ACCAAAGACA TTCAGGCAGT GTACCAGTTC 
GGTGCAAACC GCAAGGCGCC TACCCAGCGG ATGAATTACA GTGGCGACGA CCGTGAGTTT 
TATCCCAACA CGGGTGCTTA CCAATATAAC AGCAAGATCG GCGCGAACTC GGTGAGCGTT 
TTGACCAACA CTACCAAAGG ACATTCGATT AATGCGACGA TTGGTTTGAC AATGCAGGCA 
AGACGCGGAT TCTACGGATC GCTTTACTAC TCGCATACTT CGGCTAAGAC TACCACCGAC 
AACAACGGTT CTAATGCCAG CTCAGCATGG GGTGCAACGC CGAACATCAA CAACCCGAAC 
GACCTGAGAC TATACAGCTC CGATGGCGCA CTTCCGCACC GTCTGATCGG TACGCTCTCT 
TACCGCATCG AATATGCGAA CCACCTGGCA TCGACATTCT CGCTGTATTA TAACGGTGCA 
AATCAGGGCC GTCTTTCTTA CACTTACAAT GGTGACATGA ATGGCGACGC GATCGGCGCG 
GATATCTTGT ACATTCCGAG AAATGCTTCC GAGCTTACTT TTGCGAATTC AACCGTAAAC 
GGTGTAACGT TCACAGCCGA GCAGCAACGC GATGCTTTCG AGGCATACAT CAAAGGCAAC 
TCATACCTGA ACGAGAACCG CGGCAAATAC GCAGCACGCA ACGGGGATCT TATGCCTTGG 
CTCAACCGTT TCGACTTCAA ATTCTTGCAG GATATTTTCA CCAACATCGG CAAATCGAAA 
CATACGCTGC AACTCAGCGT GGACGTGATC AACGTCGGCA ACCTGCTGAG CTCGAAGTGG 
GGCGTTCGCC AGGAAATCAT TTCCGGTGCC AACATGCCGC TCCGCCGCGC GAGCGTGACG 
CCGGACGGTG TTCCAACCTT CACCATGAAC GCGGTTCAGG TAGGTGGCAA AACGGTATTG 
CCAACCAGCG TCTTCCGCGA CATTACCACT ACTTCCACTA CATGGAGCAT GCTGGTAGGG 
GTTCGGTACC TGTTTTAA 

 

Protein sequence

MNGKSLLFRA FAATLLLCCL FVSPESMGQV TTSSINGFIT DAAGEFLPGA TVTAVHEPSG 
TTYGTVTTEA GRYTFPSVRI GGPYKVTVSY VGFSEQSRTN IFAELGLAAS VNITLQEGGT 
QLEEVLISSS AGQMFNGERT GAASSINTEQ LRTLPTVTRS ISDFTRLSPQ SNGGNSFGGR 
DGRYNNFQVD GANFNNGFGL NDNPLPGGGG LSIDAIEEIQ VNIAPYDVRQ SGFSGAGINA 
VTRSGTNKFT GSAYGFFNNQ DLQGKKVNGD DITRPDATSQ TLGFRLGGPL IKNKLFFFVN 
AEHIKKTGSG VGAVNLWKAS ENGVADPDRN ISRTRRADLE AVRNHLINQW GYDPGAYENY 
ANDNSEKTTS FLARIDWNIN AKNKLAVRYN QVESSAPSLV NANSGANPRT PFETGRVSSL 
SMAFANTMYN TKNIVRSITA ELNSELTPRL SNQFLATYSR IQATRSSPSR EFPMIDIGFA 
GDSLRNTGVT TYQNYISAGY ELFTYGNDVL NDNFIITNNL NYAVGRHNFT AGASFEMQKF 
GNRYLRNGTS YYRYASVEEF LATGTPNEGA PLQFALTYPY EGQDPYAPVK YGLPSIYIQD 
KFDISDRFTL TAGIRAEMPV FLNSLTRNAS VDTLQLLGVG GGMRTYDTGS WPKTRVMLSP 
RVGFRWDAKG DNSLILRGGT GIFAGRVPFV WLTNMPSNLG VIQNTVEPGS YAASAPWIGD 
IRFQPDKYYW LNNTPASAQN VFIKNPRAGL PSTLALVDEN FKMPQIWRTS FGVDYKIPGT 
PFAITGDVIY TKDIQAVYQF GANRKAPTQR MNYSGDDREF YPNTGAYQYN SKIGANSVSV 
LTNTTKGHSI NATIGLTMQA RRGFYGSLYY SHTSAKTTTD NNGSNASSAW GATPNINNPN 
DLRLYSSDGA LPHRLIGTLS YRIEYANHLA STFSLYYNGA NQGRLSYTYN GDMNGDAIGA 
DILYIPRNAS ELTFANSTVN GVTFTAEQQR DAFEAYIKGN SYLNENRGKY AARNGDLMPW 
LNRFDFKFLQ DIFTNIGKSK HTLQLSVDVI NVGNLLSSKW GVRQEIISGA NMPLRRASVT 
PDGVPTFTMN AVQVGGKTVL PTSVFRDITT TSTTWSMLVG VRYLF