| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4906 |
|---|
| Symbol | |
|---|
| ID | 8228512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5930418 |
|---|
| End bp | 5931902 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644932755 |
|---|
| Product | glycyl-tRNA synthetase |
|---|
| Protein accession | YP_003089272 |
|---|
| Protein GI | 255038651 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0423] Glycyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00389] glycyl-tRNA synthetase, dimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0719928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG CACCTGCTAC CTCTTTGCAA GACATTGTTG GGCATGCGAA GGAATACGGT
TTCGTGTTCC CTTCTTCCGA AATATATGAT GGTTTACAAG CCGTTTACGA TTATGGCCAG
AACGGCGTAG AGCTGAAAAA CAATCTGAAA GCGGCCTGGT GGAAGGCCAT GACGCAGCTG
AACGACAATA TCGTCGGCAT TGATGCGGCC ATTTTCATGC ATCCGCTCAC CTGGAAAGCT
TCCGGCCACG TCGATGGTTT CAACGATCCG ATGATCGATA ACAAGGATTC CAAAAAGCGC
TACCGCGCCG ATCAGTTGCT GGAAGGCAAG GCGGAACAAT ATGAAAAAGA CGGCCAGCCC
GAAAAAGCGA AAGCGTTGCT GGCTGAAATG GGCCGGTTGC TCAGCGCCGA GGACCTGAAC
GGCGTCCGCG AGCTGATTAT CGCAGAAGAT ATCAAATGCC AGGTGTCTGG CACGACCAAC
TGGACGGAAG TGCGCCAGTT CAACCTCATG TTCAGCACGC AGGTGGGATC GGTGGCCGAG
GATGCCAACA TGATTTACCT TCGTCCGGAA ACGGCACAGG GGATTTTCGT CAACTTCCTC
AATGTGCAGA AAAGCGGCCG TATGAAGGTT CCATTCGGTA TCGCGCAGAT CGGTAAGGCA
TTCCGTAACG AAATCGTGGC GCGCCAGTTC ATCTTCCGCA TGCGCGAGTT CGAACAAATG
GAAATGCAAT TCTTCGTACG CCCCGGCACC GAGCAGGAGT GGTACGAGAA ATGGAAAGAG
GCACGCCTGA AATTCCACAA GGCAATAGGC CTGCCCGCTG AAAAACTGAA ATACCACGAC
CACGACAAGC TGGCGCATTA TGCCAAAGCG GCTGTCGATA TCGAGTTCGA ATTCCCGTTC
GGGTTCCGCG AGATTGAAGG TATCCACTCC CGCTCCGACT TCGATTTGCG CAATCATCAG
GAGCTTTCGA AGAAAAAGCA ACAGTATTTC GACGCCGATC TGGATGAGAA TGGCAAGCCT
TACGGAAATT ACATCCCTTA CGTGGTGGAA ACGTCCGTTG GCGCCGACCG TCTGTTCCTG
GCGACATTCT GCAATGCGTA CACCGTGGAA TCGGTAGGCG AGGGCGATGC CGCCAAAGAG
CGCACCTTCC TGAAACTGCA CCCCGCGCTG GCGCCTTTCA AAGCAGCGGT GCTGCCGTTG
GTTAAGAAGG ATGGCCTTGC TGAAAAAGCG CAGGCGCTGG CCAACTCGCT GAAATCGTCG
TTCCGCACTG TTTACGACGA CAACGCGGCG ATCGGCAAGC GTTACACCCG TCAGGACCTG
ATCGGAACAC CTTACTGCAT TGTGGTCGAC TACCAGACAA TGGAAGACGA CACCGTAACG
ATCCGCCACC GCGACACCAT GGAGCAAGAG CGCGTCCATA TCAGCGAGTT GAAAGAAAAA
ATCGGTTACC AGGTAGCAAT TGAGCGAATT CTCGAAGCGA TCTGA
|
|---|
| Protein sequence | MSQAPATSLQ DIVGHAKEYG FVFPSSEIYD GLQAVYDYGQ NGVELKNNLK AAWWKAMTQL
NDNIVGIDAA IFMHPLTWKA SGHVDGFNDP MIDNKDSKKR YRADQLLEGK AEQYEKDGQP
EKAKALLAEM GRLLSAEDLN GVRELIIAED IKCQVSGTTN WTEVRQFNLM FSTQVGSVAE
DANMIYLRPE TAQGIFVNFL NVQKSGRMKV PFGIAQIGKA FRNEIVARQF IFRMREFEQM
EMQFFVRPGT EQEWYEKWKE ARLKFHKAIG LPAEKLKYHD HDKLAHYAKA AVDIEFEFPF
GFREIEGIHS RSDFDLRNHQ ELSKKKQQYF DADLDENGKP YGNYIPYVVE TSVGADRLFL
ATFCNAYTVE SVGEGDAAKE RTFLKLHPAL APFKAAVLPL VKKDGLAEKA QALANSLKSS
FRTVYDDNAA IGKRYTRQDL IGTPYCIVVD YQTMEDDTVT IRHRDTMEQE RVHISELKEK
IGYQVAIERI LEAI
|
|---|
| |