| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4641 |
|---|
| Symbol | |
|---|
| ID | 8228247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5603857 |
|---|
| End bp | 5607015 |
|---|
| Gene Length | 3159 bp |
|---|
| Protein Length | 1052 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644932490 |
|---|
| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
|---|
| Protein accession | YP_003089007 |
|---|
| Protein GI | 255038386 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0463789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.947312 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAAA AATTCATTGA GCGGCCAGTG CTCTCGCTGG TCATTTCTAT CTTTATAACC
CTACTCGGCG TTCTGGCTGT GCTGGAACTA CCCGTATCCC AGTTTCCCGA TATCGTACCG
CCGTCGGTGG TCGTAACGGC CACCTACACC GGTGCCAATG CCGAGGTGTG CGTTGATGCC
GTGGCCGTAC CGCTCGAAAA GGCGATCAAC GGGGTGCCCG GCATGACTTA CATGACCAGC
GTGTCCGGTA ACGACGGTGT TACCACCATC AATATTTCAT TTAATGTCGG CGTGGACCCC
GACCTTGCCG CGGTGAACGT GCAAAACCGC GTTCAGACGG TTATTGACGA ACTTCCCGAA
GAGGTAATCA AGGCCGGTGT AACCACGGAA AAAGAGGTAA ACAGTATGCT CATGTACCTC
GATATCATGA GCTCCGACAC CACCGTAGGC GAGGATTTTG TGTACAACTT CGCCGATATC
AATATCCTCA AAGAGCTGAA AAGGATCGAC GGCGTGGGCC GCGCGCAAAT TATGGGTAGC
AAAGACTACT CCATGCGCGT ATGGCTGGAA CCGGATCGTA TGAACAGCTA CAATGTCTCC
GCTGACGAGG TGATCCAGGC CATCCGCGAC CAGAACGTGG TAGCGGCACC AGGTAAAACC
GGTGTGAGCT CCGGCCGTGA AAAGAATGTA TTGCAATATG TTTTGAAATA CACCGGAAAA
CTGTTCGAAC CTGCTCAGTA CGAGAATATC GTGCTCCGCT CGAACCCCGA CGGTTCCATT
CTGAAACTGA AAGACGTCGC CAAGATCGAA TTCGGTACTT TGGAATATGA TATGGCATCG
AAATCGAACG GGCGCCCATC GGCTTCGATC ATGATCAAGC AGCGCCCCGG TTCCAATGCG
CAGGAAGTAA TCCAGAATAT CAAGGATAAA GTAGCCGAAC TGAAAGGCGC AACATTCCCT
CCCGGAATGG ATTATTTCGT TTCCTACGAC GTTTCGCGCT TCCTCGATGC CTCCATTCAC
GAGGTTATTC GCACGCTCAT CGAGGCATTT ATTCTCGTAA TCCTCATTGT GTATTTGTTT
TTGCAGGACT TCCGCTCCAC GCTGATCCCG GCCCTGGCGG TGCCGGTGGC ATTGGTCGGT
ACGTTTGCTT TCATGCAGCT GTTTGGATTC TCGATTAACC TGCTTACGCT TTTTGCATTG
GTACTTGCAA TTGGTATTGT CGTCGATAAT GCCATTGTGG TCGTCGAGGC AGTGCACGCC
AAGATGGCCG AAAAGCACCT GAACGCCTAC GAGGCGACCA TCGAATCGAT GAAGGAAATG
AGTGGCGCAA TCATCGCGAT CACGCTGGTA ATGTCGGCCG TATTCGTACC GGTGGCATTC
ATGTCCGGGC CGGTCGGGAT ATTCTACCGG CAATTTTCGA TCACCCTCGC CATTTCCATT
GTCATATCGG GTATCAATGC CCTTACGCTC ACGCCGGCAT TATGTGCGCT GATGTTGAAG
AATACCCACG GGCAGCCTGT AAAAAACAAT CCTCTGACAA GATTTTTCAA CGGGTTCAAT
AAAGGCTATA ACGGCGTTCA GAGCGGTTAC CGCAAACTGC TGACCGCGAT CGTGGGCCGC
CGGATGATTA CGATCGGATT GCTCATCGGT TTCTGTGTAG CTACATTTGG CATTAACACC
ATTCTCCCGA GCGGATTTAT CCCTACCGAA GACCAGGGCG TAATCAACGT GAACGTAACG
ACGCCCGTAG GCGCAACCGT CGAACGGACC GAGGTGGTGC TGGATGAGAT CCAAAAAGTA
GCGGAGAGCC TCGAAGCCGT CGAATCGGTA TCCTCACTAT CGGGTTACAG CCTTCTCACC
GAATCGGCCG GTTCGTCGTA CGGTATGGCG ATGATCAACC TGAAACCCTG GGATCAGCGG
AGCGTTTCGG TGCAGGACAT TATCAGGGAA ATGGAAGCCA AAACCAAGCA CATTAAAGAT
GCGGAGATCC AGTTCTTCCC GCCTCCTACC GTGCCCGGGT TTGGTAACTC TTCCGGTTTC
GAGCTGCGCT TGCAGGACCG CTCCGGTAAC GAAGACCTTC AAAAAACGGC CGAGGTCACC
AATAAGTTTG TCAAAGACCT CATGGCCACG CCCGAGATCG CTGCGGCATT CAGTAGCTTC
GATGCGAGCT TCCCGCAATA CCTGATCCAC GTCGATTCGG ATATTGCAGC CAAAAAAGGC
GTTTCCATCG ACGTCGCAAT GAGCACGCTC CAAACGATGA TCGGTAGCTA CTACGCATCC
AACTTCATCC GTTTCGGGCA GATGTACAAG GTAATGGTGC AAGCCGATGC GAGCTTTCGT
AAAAACCCGG AAGACATTCT CAAATTGTAT GTCAAAAACA ACCGGGGCGA AATGGTGCCG
TTCTCGACAT TCATCCGACT TGAAAGGGTA TACGGCCCTG AGCTGCTCAC GCGTTACAAT
ATGTACACGT CGGCGATGAT CAACGGTGAC GCTGCGCCCG GTTTCAGTAG CGGTGACGCC
ATTAAAGCAG TGGAGCGCGT AGCGGCTACC AGCCTTCCGA AAGGTTACAC CTACGACTGG
TCGGGTATGA CGCGTGAAGA AATCCTGTCG GGCAACCAGG CTGTGTTCAT CTTCGCGATC
TGTCTCATAT TCGTGTACCT GTTGCTAGCG GCACAGTATG AAAGTTTCCT GCTACCGCTG
CCGGTAATCC TTTCCTTGCC CACAGGGGTG TTCGGTGCAT TCCTTGCATT GAAACTGATG
GGATTGGAGA ACAACATTTA CGCACAGGTT TCCCTGGTCA TGCTAATTGG TCTTTTAGGT
AAAAACGCGA TCCTGATCGT TGAATACGCC ATTATCCGGC AGAAAGAAGG CCGAACGGTG
ATCGAGGCGG TGCTGGAAGG TGCCACGGAA CGTCTGCGTC CGATCCTGAT GACCTCTTTT
GCATTCGTCG CGGGACTTAT CCCGCTCGTA ATGGCCTCAG GTGCAGGAGC AATCGGGAAC
CGGTCCATCG GGGCTGCGGC TGCCGGCGGG ATGCTCATCG GTACCATTTT CGGGGTGATC
ATCATTCCGG GCTTGTATGT GGTATTCGCG GGCATGGCCA GGGAGAAAAA AACACCCCCT
CCGGTAGTGG CGACGGAGGA AGAGGCAATG CTGCACTAA
|
|---|
| Protein sequence | MFQKFIERPV LSLVISIFIT LLGVLAVLEL PVSQFPDIVP PSVVVTATYT GANAEVCVDA
VAVPLEKAIN GVPGMTYMTS VSGNDGVTTI NISFNVGVDP DLAAVNVQNR VQTVIDELPE
EVIKAGVTTE KEVNSMLMYL DIMSSDTTVG EDFVYNFADI NILKELKRID GVGRAQIMGS
KDYSMRVWLE PDRMNSYNVS ADEVIQAIRD QNVVAAPGKT GVSSGREKNV LQYVLKYTGK
LFEPAQYENI VLRSNPDGSI LKLKDVAKIE FGTLEYDMAS KSNGRPSASI MIKQRPGSNA
QEVIQNIKDK VAELKGATFP PGMDYFVSYD VSRFLDASIH EVIRTLIEAF ILVILIVYLF
LQDFRSTLIP ALAVPVALVG TFAFMQLFGF SINLLTLFAL VLAIGIVVDN AIVVVEAVHA
KMAEKHLNAY EATIESMKEM SGAIIAITLV MSAVFVPVAF MSGPVGIFYR QFSITLAISI
VISGINALTL TPALCALMLK NTHGQPVKNN PLTRFFNGFN KGYNGVQSGY RKLLTAIVGR
RMITIGLLIG FCVATFGINT ILPSGFIPTE DQGVINVNVT TPVGATVERT EVVLDEIQKV
AESLEAVESV SSLSGYSLLT ESAGSSYGMA MINLKPWDQR SVSVQDIIRE MEAKTKHIKD
AEIQFFPPPT VPGFGNSSGF ELRLQDRSGN EDLQKTAEVT NKFVKDLMAT PEIAAAFSSF
DASFPQYLIH VDSDIAAKKG VSIDVAMSTL QTMIGSYYAS NFIRFGQMYK VMVQADASFR
KNPEDILKLY VKNNRGEMVP FSTFIRLERV YGPELLTRYN MYTSAMINGD AAPGFSSGDA
IKAVERVAAT SLPKGYTYDW SGMTREEILS GNQAVFIFAI CLIFVYLLLA AQYESFLLPL
PVILSLPTGV FGAFLALKLM GLENNIYAQV SLVMLIGLLG KNAILIVEYA IIRQKEGRTV
IEAVLEGATE RLRPILMTSF AFVAGLIPLV MASGAGAIGN RSIGAAAAGG MLIGTIFGVI
IIPGLYVVFA GMAREKKTPP PVVATEEEAM LH
|
|---|
| |