Gene Dfer_4605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4605 
Symbol 
ID8228211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5561303 
End bp5563678 
Gene Length2376 bp 
Protein Length791 aa 
Translation table11 
GC content47% 
IMG OID644932454 
Productpolysaccharide export protein 
Protein accessionYP_003088971 
Protein GI255038350 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.321524 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAGAC AATACATTGT TGCTATATAC TTTGTGTTTC TTATCTTATT CAGTTTTCAA 
GGCTTCACCC AAAACACTGC ACCTGCTACG GCTCCCACCC AATCCCCGGG AACAGCCCCA
GTAAACACGA ATCAGGCCGT TGAATTCTAC AACCAGGCAA AAAGCGCCGG GATGTCAGAT
ATGGATATTG AGAAGGCTGC GTTGCAAAAA GGATATACGC TCGACGATAT TTCAACCATT
CGCAGGCGTT TGCAGCAAAC TTCACAGGAC AATACAAAAA GGGACCCTAA CCGCGATGCA
CTGGACGAAA CCCGCGAACA GGACGACCAG GACGAGCTGG ACGAAGAGAC CAATAACGAC
AAGGATTCGA CGGCATCCAG AAATGCCAGA TCCCGCATTT TGAGCCGGAC ATTTGGATCG
TCGTTTTTCG GACGGTCCAC CGTGACTTTC GAGCCGAATC TTCGGATACC TACTCCCAAG
AACTACGTTC TTGGACCGGA CGACGAGCTC GTTGTGGATA TTTACGGAAA TTCCGTCGAC
AATTTCCGGA TGAAAGTTAG TCCCGAAGGA ACCGTAAAGA TGCTTAACCT GGCTCCCGTT
TATATCAACG GACTTACCAT CGAACAGGCT AGCGAGCGGA TTGTAAATCG GTTAAGACAA
GCTTATTCAA CTTTGAACAG GCCCGGCTCC GGGACATATT CGACCATCAC GCTAGGCAAT
GTGCGAAGCA TTCGTGTGAT GGTGGTTGGG GAAGCTGTCC GGCCTGGAAC TTACACGGTT
TCTTCTTTAT CGACTGCTTT TAATGCATTA TATGTCTCCG GAGGTCCTGG AATTAATGGA
TCGTATCGCA ATATTGAAGT CATCAGGAAC AATAAACTGG TCAAGAAAAT TGACTTGTAC
CGATTTCTGG TAGATGCAGA TCTGCAAGAC AACATTGCGC TGCAAGACCA GGACATTATT
TTGATCCGCC CTTATGAAAC TAAATTAGAG CTGAATGGTG CAGTCAAAAA GACAGGAATC
TTTGAAGCCA AGCCTGGCGA GACGTTAAAA GATGTTCTTC GTTACGCAGG GGGCTATACG
CCGGAAGCAT TTACCGACCT TATACAATAC CAGCGCAATA CAGGCAATAA TTTTGTCATC
GGCTCTATTG ATTCTTCGCA GGTAGCGACC TTTCAGCCTC GAAATGGCGA TATTTATGAA
GTAAAAAGGA TTCTCGAAGT GGTGGTGAAC CAGGTAGAGA TAAGAGGAGC GGTCACCCGC
CCGGGCATTT ATCCGCTCGA CGAAAGGACC AAGACAGTCA AAGACCTTAT CACCATTTCC
CAGGGAACGG GGCCAAGAGC CTTTTTGAAC CGTGCCCTCC TGGAAAGAGC AAGCGGTGAC
ACTCAAACGG GCCTTGTTGC CATCGATCTC AGGAAACTTT TGAACGGAGA AATCCCCGAT
ATTCAACTTC AACCGGGAGA CATTCTGACC ATTAAATCGG TCGAGGATCT ACGTGAGTTC
ACTTATCTTT CCATAGGCGG CTCGGTAATT AATCCCGGGG CTTACTACTA CTATAAAGAT
ATCACGATTG CTGACCTCAT ATTCCAGGCT GGTGGCTACA CCGAAGGAGG GGTTCCCTAT
CGCATTGAGG TTTCCCGCCG TGTTAAAAAT GATACAACTG GCTTACCTGA AAATCAGAAC
GTGCGGATTT TCACATTGGA TGTGGCGGAT AATCTTGTTC TGAATGAAAA TGACCAGAAA
TTCAAACTTC TGCCGTATGA CATTGTTCTG GTAAGAAAGT CTCCGAGATA TGAAGCTCAG
AAAACAGTTA CGGTAGTTGG AGAGGTATTG TATCCAGGTA CGTACACGAT CAGAAACAAC
TTCGAGAAAA TATCCGATTT GTTCCCGAAA GTTGGAGGAA TAAAAAAGGA GGGTTATCTA
AAAGGAGCTA AATTTTACAG GAACCAGGAA CTGGTTGCCC TGGATCTCCA AGCCATTGTC
GACAAGCCTT CGATCCCTGC CAATCTGCTT CTGGCCGACG GGGACACACT TGTAATCCCC
AAAAGGTCCG AAACCATCCG GATTCAGGGC GGTGTTTATA ACCCGTCGCT CGTCAACTTC
GACAAAAACT TCACTTTCAA AGAATATATT TCCCAGGCAG GAGGGTTTAC CGAAAGAGCA
AGAAAAAGTC GCACTTATGT CTCTTATCCA AACGGGAGGA CTTACCGCAC CACGCGATTG
CTGTTTTTCC GCTCTTATCC GAAAGTAGAA CCGGGATCTG TGATTACAAT TCCAATGAAA
GTGGAAAGGC CTGATCGCCA AATGAGCCCT GGTGAAAGGA TTGCTATCAT TTCGTTGATC
AGCACGTTGG CAATTACCGC GATTCGATTC CTCTAA
 
Protein sequence
MTRQYIVAIY FVFLILFSFQ GFTQNTAPAT APTQSPGTAP VNTNQAVEFY NQAKSAGMSD 
MDIEKAALQK GYTLDDISTI RRRLQQTSQD NTKRDPNRDA LDETREQDDQ DELDEETNND
KDSTASRNAR SRILSRTFGS SFFGRSTVTF EPNLRIPTPK NYVLGPDDEL VVDIYGNSVD
NFRMKVSPEG TVKMLNLAPV YINGLTIEQA SERIVNRLRQ AYSTLNRPGS GTYSTITLGN
VRSIRVMVVG EAVRPGTYTV SSLSTAFNAL YVSGGPGING SYRNIEVIRN NKLVKKIDLY
RFLVDADLQD NIALQDQDII LIRPYETKLE LNGAVKKTGI FEAKPGETLK DVLRYAGGYT
PEAFTDLIQY QRNTGNNFVI GSIDSSQVAT FQPRNGDIYE VKRILEVVVN QVEIRGAVTR
PGIYPLDERT KTVKDLITIS QGTGPRAFLN RALLERASGD TQTGLVAIDL RKLLNGEIPD
IQLQPGDILT IKSVEDLREF TYLSIGGSVI NPGAYYYYKD ITIADLIFQA GGYTEGGVPY
RIEVSRRVKN DTTGLPENQN VRIFTLDVAD NLVLNENDQK FKLLPYDIVL VRKSPRYEAQ
KTVTVVGEVL YPGTYTIRNN FEKISDLFPK VGGIKKEGYL KGAKFYRNQE LVALDLQAIV
DKPSIPANLL LADGDTLVIP KRSETIRIQG GVYNPSLVNF DKNFTFKEYI SQAGGFTERA
RKSRTYVSYP NGRTYRTTRL LFFRSYPKVE PGSVITIPMK VERPDRQMSP GERIAIISLI
STLAITAIRF L