Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4605 |
Symbol | |
ID | 8228211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 5561303 |
End bp | 5563678 |
Gene Length | 2376 bp |
Protein Length | 791 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644932454 |
Product | polysaccharide export protein |
Protein accession | YP_003088971 |
Protein GI | 255038350 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.321524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGAC AATACATTGT TGCTATATAC TTTGTGTTTC TTATCTTATT CAGTTTTCAA GGCTTCACCC AAAACACTGC ACCTGCTACG GCTCCCACCC AATCCCCGGG AACAGCCCCA GTAAACACGA ATCAGGCCGT TGAATTCTAC AACCAGGCAA AAAGCGCCGG GATGTCAGAT ATGGATATTG AGAAGGCTGC GTTGCAAAAA GGATATACGC TCGACGATAT TTCAACCATT CGCAGGCGTT TGCAGCAAAC TTCACAGGAC AATACAAAAA GGGACCCTAA CCGCGATGCA CTGGACGAAA CCCGCGAACA GGACGACCAG GACGAGCTGG ACGAAGAGAC CAATAACGAC AAGGATTCGA CGGCATCCAG AAATGCCAGA TCCCGCATTT TGAGCCGGAC ATTTGGATCG TCGTTTTTCG GACGGTCCAC CGTGACTTTC GAGCCGAATC TTCGGATACC TACTCCCAAG AACTACGTTC TTGGACCGGA CGACGAGCTC GTTGTGGATA TTTACGGAAA TTCCGTCGAC AATTTCCGGA TGAAAGTTAG TCCCGAAGGA ACCGTAAAGA TGCTTAACCT GGCTCCCGTT TATATCAACG GACTTACCAT CGAACAGGCT AGCGAGCGGA TTGTAAATCG GTTAAGACAA GCTTATTCAA CTTTGAACAG GCCCGGCTCC GGGACATATT CGACCATCAC GCTAGGCAAT GTGCGAAGCA TTCGTGTGAT GGTGGTTGGG GAAGCTGTCC GGCCTGGAAC TTACACGGTT TCTTCTTTAT CGACTGCTTT TAATGCATTA TATGTCTCCG GAGGTCCTGG AATTAATGGA TCGTATCGCA ATATTGAAGT CATCAGGAAC AATAAACTGG TCAAGAAAAT TGACTTGTAC CGATTTCTGG TAGATGCAGA TCTGCAAGAC AACATTGCGC TGCAAGACCA GGACATTATT TTGATCCGCC CTTATGAAAC TAAATTAGAG CTGAATGGTG CAGTCAAAAA GACAGGAATC TTTGAAGCCA AGCCTGGCGA GACGTTAAAA GATGTTCTTC GTTACGCAGG GGGCTATACG CCGGAAGCAT TTACCGACCT TATACAATAC CAGCGCAATA CAGGCAATAA TTTTGTCATC GGCTCTATTG ATTCTTCGCA GGTAGCGACC TTTCAGCCTC GAAATGGCGA TATTTATGAA GTAAAAAGGA TTCTCGAAGT GGTGGTGAAC CAGGTAGAGA TAAGAGGAGC GGTCACCCGC CCGGGCATTT ATCCGCTCGA CGAAAGGACC AAGACAGTCA AAGACCTTAT CACCATTTCC CAGGGAACGG GGCCAAGAGC CTTTTTGAAC CGTGCCCTCC TGGAAAGAGC AAGCGGTGAC ACTCAAACGG GCCTTGTTGC CATCGATCTC AGGAAACTTT TGAACGGAGA AATCCCCGAT ATTCAACTTC AACCGGGAGA CATTCTGACC ATTAAATCGG TCGAGGATCT ACGTGAGTTC ACTTATCTTT CCATAGGCGG CTCGGTAATT AATCCCGGGG CTTACTACTA CTATAAAGAT ATCACGATTG CTGACCTCAT ATTCCAGGCT GGTGGCTACA CCGAAGGAGG GGTTCCCTAT CGCATTGAGG TTTCCCGCCG TGTTAAAAAT GATACAACTG GCTTACCTGA AAATCAGAAC GTGCGGATTT TCACATTGGA TGTGGCGGAT AATCTTGTTC TGAATGAAAA TGACCAGAAA TTCAAACTTC TGCCGTATGA CATTGTTCTG GTAAGAAAGT CTCCGAGATA TGAAGCTCAG AAAACAGTTA CGGTAGTTGG AGAGGTATTG TATCCAGGTA CGTACACGAT CAGAAACAAC TTCGAGAAAA TATCCGATTT GTTCCCGAAA GTTGGAGGAA TAAAAAAGGA GGGTTATCTA AAAGGAGCTA AATTTTACAG GAACCAGGAA CTGGTTGCCC TGGATCTCCA AGCCATTGTC GACAAGCCTT CGATCCCTGC CAATCTGCTT CTGGCCGACG GGGACACACT TGTAATCCCC AAAAGGTCCG AAACCATCCG GATTCAGGGC GGTGTTTATA ACCCGTCGCT CGTCAACTTC GACAAAAACT TCACTTTCAA AGAATATATT TCCCAGGCAG GAGGGTTTAC CGAAAGAGCA AGAAAAAGTC GCACTTATGT CTCTTATCCA AACGGGAGGA CTTACCGCAC CACGCGATTG CTGTTTTTCC GCTCTTATCC GAAAGTAGAA CCGGGATCTG TGATTACAAT TCCAATGAAA GTGGAAAGGC CTGATCGCCA AATGAGCCCT GGTGAAAGGA TTGCTATCAT TTCGTTGATC AGCACGTTGG CAATTACCGC GATTCGATTC CTCTAA
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Protein sequence | MTRQYIVAIY FVFLILFSFQ GFTQNTAPAT APTQSPGTAP VNTNQAVEFY NQAKSAGMSD MDIEKAALQK GYTLDDISTI RRRLQQTSQD NTKRDPNRDA LDETREQDDQ DELDEETNND KDSTASRNAR SRILSRTFGS SFFGRSTVTF EPNLRIPTPK NYVLGPDDEL VVDIYGNSVD NFRMKVSPEG TVKMLNLAPV YINGLTIEQA SERIVNRLRQ AYSTLNRPGS GTYSTITLGN VRSIRVMVVG EAVRPGTYTV SSLSTAFNAL YVSGGPGING SYRNIEVIRN NKLVKKIDLY RFLVDADLQD NIALQDQDII LIRPYETKLE LNGAVKKTGI FEAKPGETLK DVLRYAGGYT PEAFTDLIQY QRNTGNNFVI GSIDSSQVAT FQPRNGDIYE VKRILEVVVN QVEIRGAVTR PGIYPLDERT KTVKDLITIS QGTGPRAFLN RALLERASGD TQTGLVAIDL RKLLNGEIPD IQLQPGDILT IKSVEDLREF TYLSIGGSVI NPGAYYYYKD ITIADLIFQA GGYTEGGVPY RIEVSRRVKN DTTGLPENQN VRIFTLDVAD NLVLNENDQK FKLLPYDIVL VRKSPRYEAQ KTVTVVGEVL YPGTYTIRNN FEKISDLFPK VGGIKKEGYL KGAKFYRNQE LVALDLQAIV DKPSIPANLL LADGDTLVIP KRSETIRIQG GVYNPSLVNF DKNFTFKEYI SQAGGFTERA RKSRTYVSYP NGRTYRTTRL LFFRSYPKVE PGSVITIPMK VERPDRQMSP GERIAIISLI STLAITAIRF L
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