| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4344 |
|---|
| Symbol | rplD |
|---|
| ID | 8227947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5270364 |
|---|
| End bp | 5270993 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644932191 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_003088711 |
|---|
| Protein GI | 255038090 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.000409516 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.126717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGT CCGTATTAAA TATAAAAGGA GAAGATACCG GCAAGAAGGT AACTGTGTCA
GAGGAAGTAT TCGGCATTGA ACCTAGCACG CACGCGATCT ATCTCGATGT GAAGCTTTAC
CTGGCTAACC AGCGTCAGGG AACGCACAAA TCAAAAGAAC GTGCAGAGGT AAGTCACTCT
ACACGCAAAA TCAAACGCCA AAAAGGAACC GGTGGAGCTC GTGCAGGTAG CATTAAGTCT
CCAGTGTTCG TAGGTGGTGG TCGTATTTTC GGTCCACGTC CCCGCACATA CGGTTTCAAA
CTGAACAAGA AAGTAAAAGC TTTGGCTCGC CGTTCGGCAC TTTCTGTGAA GGCGCAAGCT
AACGCCGTTT CGGTTTTGGA AGCATTCACT TTCGATGCAC CTAAAACGAA GTCTTACCTG
AATGTTTTGA ATTCCCTTTC ACTGGCGAAC ACCAAAACAT TATTGATCCT TCCTGAGATC
GATAACAATG TATACCTGTC GAGCCGTAAC ATCCCGAAAG CGAAAGTTAC TACTGTTGAC
TCGGTAAATA CATACGACCT GATGAATGCA GACCGTCTTC TGATAAGTGA ATCTGCGATT
TCTATTTTGG AAACCCAATT GAACAAATAA
|
|---|
| Protein sequence | MELSVLNIKG EDTGKKVTVS EEVFGIEPST HAIYLDVKLY LANQRQGTHK SKERAEVSHS
TRKIKRQKGT GGARAGSIKS PVFVGGGRIF GPRPRTYGFK LNKKVKALAR RSALSVKAQA
NAVSVLEAFT FDAPKTKSYL NVLNSLSLAN TKTLLILPEI DNNVYLSSRN IPKAKVTTVD
SVNTYDLMNA DRLLISESAI SILETQLNK
|
|---|
| |