| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4321 |
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| Symbol | |
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| ID | 8227924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5237101 |
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| End bp | 5237874 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644932168 |
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| Product | Shikimate dehydrogenase substrate binding domain protein |
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| Protein accession | YP_003088688 |
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| Protein GI | 255038067 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000245663 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACTTAT ACGGCCTGAT TGGATTCCCG CTGACACACT CTTTTTCGAA GCGATATTTC
ACTGACAAAT TCCTGCGCGA GAAAATCAAG GAGAGCAGCT ATGAGCTTTT TGAGATGAAA
TCGCTGGAAG AATTGCCGGA ATTGCTGAAA AAAAAGCAGG ACTTGCGCGG ACTGAATGTG
ACGATCCCCT ATAAGAAGGA TGTAATCGCC TATCTCGACG ACCTCGATGA CGCATCAGCC
GAGCGAATAG GTGCGGTGAA TACGATCAAA ATCTACGCTG ACGGAAGCAC AAAAGGCTTT
AATACAGACT ATTACGGATT CCAGCAATCA CTCGTAGAAT GGCTCGACCG CCGGGGTGAA
AATTGTGCCA ATTTCAAAGC ATTGATCCTC GGAAATGGCG GCGCGGCGAA GGCGGTGCAG
GTAGCATTGA CCGACCTCAA CGTCGGATAT ATGCAGGTTT CGCGCCAGAA AAGCGACGAT
TGTCTGCCCT ATGAGGAACT TACACAAGAC ATGATGGGAA GCCACCGGCT GATCATCAAT
ACCACCCCGT TGGGAACTTA TCCCAACACC GAAGAGTGCC CGATGATCCC CTACCAGTGG
GTCAACCGCA GCCATTATCT CTACGACCTC GTCTATAATC CAGCCGAGAC ATTGTTTCTT
AAAAAGGGCA CGGAACAAGG CGCTGCGACG ATGAATGGCC TGAAAATGCT GGAATTGCAG
GCGGAAAAGG CCTGGGATAT CTGGACGACC GAAGAAAATC TCTGGAGTAT TTAA
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| Protein sequence | MNLYGLIGFP LTHSFSKRYF TDKFLREKIK ESSYELFEMK SLEELPELLK KKQDLRGLNV
TIPYKKDVIA YLDDLDDASA ERIGAVNTIK IYADGSTKGF NTDYYGFQQS LVEWLDRRGE
NCANFKALIL GNGGAAKAVQ VALTDLNVGY MQVSRQKSDD CLPYEELTQD MMGSHRLIIN
TTPLGTYPNT EECPMIPYQW VNRSHYLYDL VYNPAETLFL KKGTEQGAAT MNGLKMLELQ
AEKAWDIWTT EENLWSI
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