Gene Dfer_4305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4305 
Symbol 
ID8227908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5218407 
End bp5219162 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content57% 
IMG OID644932152 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003088672 
Protein GI255038051 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.400321 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATGCCT TCTCGCTCCA AGGCAAAATC GCCCTCGTAA CCGGCGGCGG GAGCGGCATC 
GGCTTTTACA TTGCACAATG CCTAGCGCAA GCGGGCGCCA GGCTCGTCAT CACCGGCCGC
CGTGAGGATG TTTTAAAAGA AGCATTGCCC CGACTTGGCC CCGACGCGCA TTACTTTGTA
AATGACGTGA CGGACCTGAA ATCCATCCCG GCACTGATCG AGGCGATCGA AAAGGAGGTC
GGGGAGATTG ATATTCTGGT CAACAATGCG GGTATCAATA TGAAAAAGCA CGCCGTGGAA
GTTACCGACG AGGACTTCGA CCGCATTGTG CAAACCAACC TGCACGCTGT TTTTTCGATC
ACCCGCGAAT GCGGCAAGCG CATGGTGGAA CGCAGGCGCG GCACTATCCT GATGATCACG
TCAATGGCTG CATTATACGG TATCGACCGC GTAGTGGCCT ACACCGCATC CAAATCGGCT
GTGGGCGGGA TGGTGAAGGC ATTAACGACC GAGTTCTCGC CTTATAATGT CCGCGTAAAC
GCCATTGCGC CGGGTTTTAT CGAAACACCG ATGATGCTCA CCGCCATGAA CGGCGACCCG
TCGCGCCGCG ATAAAGCGAT GGACCGCACG CCGATGGGAA CCTGGGGCAA GCCAGACGAT
ATCGGCTGGG CGGCCGTGTT CCTCAGCTCG GAAGCCGCGA AGTTCATTAC GGGTGTTACC
CTGCCGGTGG ACGGAGGAAA TTCCATCGGA TTTTAG
 
Protein sequence
MNAFSLQGKI ALVTGGGSGI GFYIAQCLAQ AGARLVITGR REDVLKEALP RLGPDAHYFV 
NDVTDLKSIP ALIEAIEKEV GEIDILVNNA GINMKKHAVE VTDEDFDRIV QTNLHAVFSI
TRECGKRMVE RRRGTILMIT SMAALYGIDR VVAYTASKSA VGGMVKALTT EFSPYNVRVN
AIAPGFIETP MMLTAMNGDP SRRDKAMDRT PMGTWGKPDD IGWAAVFLSS EAAKFITGVT
LPVDGGNSIG F