Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4169 |
Symbol | |
ID | 8227767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 5029453 |
End bp | 5030544 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644932012 |
Product | helix-turn-helix domain protein |
Protein accession | YP_003088537 |
Protein GI | 255037916 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2856] Predicted Zn peptidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00295679 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTCGC CGTTCCCCTA CCGATTGACC ACCGCCCGGA AAATGAAGGG ATTGTCACTA CAAAAATTGG CTATTATGCT AGGGAGACCA TTTAACAAAC AACTACTGCA CAGGCTGGAA AACGGTAGCC AGGTGCCCAA TGGCAATCAG TTGATCAAAC TGAGTAATGC ACTTGACCAG CCGCTTGACT ATTTTCTGAA ACCTTCTTTT GCAACGGTTG CTGAACTCGA CTCGAAGAAA ATCCAAAAAG CAGGAAAAAA GGCGGGCGGA CGCGTTCTCG AGTTGGCGAG CGATTACTTT GAGCGATTTC TGGAACTCGA AGATTTGCTT GGAATTAAGC ATCAAACTCA GTGGCCATTT CAAAGCGTGA AACTGGTGCC AGGCGATTAT GCGGCAATAA ACCAAGCCGC ATTGCATGTT CGCCAGATGA TCTGGAACGT AGGAACCGGT CCATTGCACA ACATTAGCGG CATTTTGGAA ACGAATGGGT TGAAAGTTCT TATGGTTTCA GAAGAATCGC TGCCCGAGGC CACATTTGAT GGATTCTCCA CCATTGTCAG CGGAGAAAAA GGTTGCATTG TAGTCAACGA GAACCCGGCT ATCCCGCTTG TCAGGAAACG CTTTATATTG CTTCGGGAAT TCGTAAATCT GTACATCGAC GTCTCGGAGC TGGAAACGAA GGAAGCTAAG ACCGTTTGCG ATGCTTTTGC AGGGGCACTG TTAGCACCGA GATTGTCGTT GATCGAAGCC TTTGGGGAGT ACCGTACCTC AATTCATATC ACTGAACTTT TACTTTTTCA GCGCATTCAT GGTGCTCCGA TCAGCGTGAT TTTATCAGCA CTCCGGCAAA ACGGGATCAT TTCCCAATCC CACTTTACCG AACAAATGGT TCAATATAAT GCAGGGTTGA AAGCCCACGA TGGCGGCAGC TTTGCGGGAA TTGAGGAACC ATACCGATTT CAGCAACTTC TTCTCCGAGC ACTGGCTTGT GGAATTGTCT CCGAAAGCAA AGCCGCCTCG CTGATGAACA TGAAAGTCGC GGAATTCAGG GAATATTTAG ACAAGATGCT GGATGAGAAT AGCGGTCACT GA
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Protein sequence | MDSPFPYRLT TARKMKGLSL QKLAIMLGRP FNKQLLHRLE NGSQVPNGNQ LIKLSNALDQ PLDYFLKPSF ATVAELDSKK IQKAGKKAGG RVLELASDYF ERFLELEDLL GIKHQTQWPF QSVKLVPGDY AAINQAALHV RQMIWNVGTG PLHNISGILE TNGLKVLMVS EESLPEATFD GFSTIVSGEK GCIVVNENPA IPLVRKRFIL LREFVNLYID VSELETKEAK TVCDAFAGAL LAPRLSLIEA FGEYRTSIHI TELLLFQRIH GAPISVILSA LRQNGIISQS HFTEQMVQYN AGLKAHDGGS FAGIEEPYRF QQLLLRALAC GIVSESKAAS LMNMKVAEFR EYLDKMLDEN SGH
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