Gene Dfer_4169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4169 
Symbol 
ID8227767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5029453 
End bp5030544 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content48% 
IMG OID644932012 
Producthelix-turn-helix domain protein 
Protein accessionYP_003088537 
Protein GI255037916 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2856] Predicted Zn peptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00295679 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTCGC CGTTCCCCTA CCGATTGACC ACCGCCCGGA AAATGAAGGG ATTGTCACTA 
CAAAAATTGG CTATTATGCT AGGGAGACCA TTTAACAAAC AACTACTGCA CAGGCTGGAA
AACGGTAGCC AGGTGCCCAA TGGCAATCAG TTGATCAAAC TGAGTAATGC ACTTGACCAG
CCGCTTGACT ATTTTCTGAA ACCTTCTTTT GCAACGGTTG CTGAACTCGA CTCGAAGAAA
ATCCAAAAAG CAGGAAAAAA GGCGGGCGGA CGCGTTCTCG AGTTGGCGAG CGATTACTTT
GAGCGATTTC TGGAACTCGA AGATTTGCTT GGAATTAAGC ATCAAACTCA GTGGCCATTT
CAAAGCGTGA AACTGGTGCC AGGCGATTAT GCGGCAATAA ACCAAGCCGC ATTGCATGTT
CGCCAGATGA TCTGGAACGT AGGAACCGGT CCATTGCACA ACATTAGCGG CATTTTGGAA
ACGAATGGGT TGAAAGTTCT TATGGTTTCA GAAGAATCGC TGCCCGAGGC CACATTTGAT
GGATTCTCCA CCATTGTCAG CGGAGAAAAA GGTTGCATTG TAGTCAACGA GAACCCGGCT
ATCCCGCTTG TCAGGAAACG CTTTATATTG CTTCGGGAAT TCGTAAATCT GTACATCGAC
GTCTCGGAGC TGGAAACGAA GGAAGCTAAG ACCGTTTGCG ATGCTTTTGC AGGGGCACTG
TTAGCACCGA GATTGTCGTT GATCGAAGCC TTTGGGGAGT ACCGTACCTC AATTCATATC
ACTGAACTTT TACTTTTTCA GCGCATTCAT GGTGCTCCGA TCAGCGTGAT TTTATCAGCA
CTCCGGCAAA ACGGGATCAT TTCCCAATCC CACTTTACCG AACAAATGGT TCAATATAAT
GCAGGGTTGA AAGCCCACGA TGGCGGCAGC TTTGCGGGAA TTGAGGAACC ATACCGATTT
CAGCAACTTC TTCTCCGAGC ACTGGCTTGT GGAATTGTCT CCGAAAGCAA AGCCGCCTCG
CTGATGAACA TGAAAGTCGC GGAATTCAGG GAATATTTAG ACAAGATGCT GGATGAGAAT
AGCGGTCACT GA
 
Protein sequence
MDSPFPYRLT TARKMKGLSL QKLAIMLGRP FNKQLLHRLE NGSQVPNGNQ LIKLSNALDQ 
PLDYFLKPSF ATVAELDSKK IQKAGKKAGG RVLELASDYF ERFLELEDLL GIKHQTQWPF
QSVKLVPGDY AAINQAALHV RQMIWNVGTG PLHNISGILE TNGLKVLMVS EESLPEATFD
GFSTIVSGEK GCIVVNENPA IPLVRKRFIL LREFVNLYID VSELETKEAK TVCDAFAGAL
LAPRLSLIEA FGEYRTSIHI TELLLFQRIH GAPISVILSA LRQNGIISQS HFTEQMVQYN
AGLKAHDGGS FAGIEEPYRF QQLLLRALAC GIVSESKAAS LMNMKVAEFR EYLDKMLDEN
SGH