Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4095 |
Symbol | |
ID | 8227693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4945238 |
End bp | 4947880 |
Gene Length | 2643 bp |
Protein Length | 880 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644931938 |
Product | valyl-tRNA synthetase |
Protein accession | YP_003088463 |
Protein GI | 255037842 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0525] Valyl-tRNA synthetase |
TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCCA AAACTTATGC CCCTCAGGAG ATAGAGGATA AATGGTACTC CTACTGGATC GAGAACAAGT TCTTTCAGTC GAAACCCAAT CCGGATAAAG AACCTTACAC CATCGTGATC CCGCCGCCGA ACGTCACCGG CGTGCTGCAC ATGGGGCATA TGCTCAATAA TACCATTCAG GACATCCTGA TCCGTAAGGC TCGGATGGAA GGCAAAGAAG CCTGCTGGGT GCCCGGCACC GACCACGCTT CCATTGCCAC CGAAGCCAAA GTGGTGGCGA TGCTCAAAGA GCGCGGCATT AATAAGCGCG ACCTCACGCG CGACGAATTC CTCGAATATT GCTGGGAATG GACGCACAAA TACGGCGGCA TTATCCTGAA ACAACTTCGT AAGCTCGGCG CATCCTGCGA CTGGGACCGC ACGCGCTTCA CAATGGAGCC GGATTTGTAC GATTCGGTGA TCGACGTTTT TATCGACCTC TATAATAAAG GAGAAATCTA CCGCGGCCAC CGCATGGTAA ACTGGGACCC GCAGGCGCGC ACGACGGTGT CGGACGAGGA GGTGATCATG AAGGAGGTGA ACCAGAAGCT GGTGTATCTT CGGTATCCGC TTGTTGGAGA GGATGGAGAA GGGAGAATGG AGGAAGGGGT GACTATTGCA ACTACCCGGC CGGAGACGAT TATGGCCGAC GTAGCGATTT GTGTAAACCC TGCAGACGAG CGTTACCAGC ATTTGATTGG TAAAAAAGTG CTCATTCCAT TGATCAATCG GGCGATTCCG ATTATCGCGG ATGATTATGT GGAAATGGAA TTCGGAACGG GCTGTCTGAA AGTGACGCCG GCGCATGATA CCAATGACTA CGAGCTTGGC AAACGCCATA ACCTGCCCAT TATCGACCTG CTCAATGAGG ATGGTACGTT AAACGACAAG GCGCAGATTC TCGTGGGCGA AGAACGTTTC GTGGCCCGGA AGAAGATCAT CAAGCTCCTC GAAGAATCGG GTAACCTCGT GAAAGTGGAG GAATACCGGT CGAATGTAGG GCATTCGGAG CGGACGGACT CCGTGATCGA GCCGCGGCTT TCGGAGCAGT GGTTTTTGAG AATGGAAAAA ATCAGCAAGC CGGCATTCGA CAATGTGATG AACGATACCG TGCAACTGAT CCCTGCGAAA TTTAAAAATA CCTACCGCCA CTGGATGGAG AATGTGCGCG ACTGGAATAT CAGCCGCCAG CTGTGGTGGG GCCACCGCAT TCCGGCTTAC TATCTCAACG ACGGCACGAT GATCGTCGCG AAGTCCAAGC GCGAGGCGTT GCGGAAAGCG CAGCACGAAT ACCAGCTTTT TGCATTGACC GAAGAGGACA TTACCCAGGA CCCCGACGTG CTGGATACCT GGTTTTCATC CTGGCTCTGG CCGATTTCGG TTTTTAATGG CATTAAAGAG CCTGATAATG AGGAGGTTAA CTATTATTAC CCGACCAATG ACCTCGTTAC TGCTCCGGAA ATTCTCTTCT TCTGGGTGGC GCGGATGATC ATCGCGGGTT ATGAATACCG CGGCCAGTAC CCGTTTAAGA ACGTGTACCT GACGGGTATT GTGCGCGATA AGCAAGGCCG CAAAATGTCG AAATCGCTGG GTAACTCGCC CGATCCGATC GACCTGATCG AAAAATATGG TGCGGATAGC ATTCGTACCG GGATGCTTTT CAGCTCGCAG GCGGGTAACG ACTTGCCTTA CGACGAGAAG CTGATCGAGC AGGGACGGAA TTTTGGTAAT AAAATCTGGA ATGCATTCCG TTTGGTAAAA GGCTGGACCG TAGACAGTGA GCTGCCGGTT CCGGAAGGTT CGAAACTGGC GGTCCAATGG TTTGAAAGTA AACTGAACCA GACATTAGCA GAAGTACAGG ACCACTTCTC GAAATTCCGC ATTTCGGATG CATTGAATTC GGTGTACAAG CTGATCTGGG ACGATTTCTG CGCGCAGTAT CTTGAAATGA TCAAACCCGG CTTCGAACAA CCGATCGATC TCTCGACTTA CGACTCGACG CTCGATTTCT TCGATCGCCA GATGCGTTTG CTGCATCCAT TCATGCCGTT TATTTCCGAG GAAATCTGGC AGAATATTAT TGAAAGGGGC GAAAAGGAGT CCATTTGCAT AGCGCATTTC CCGCAAGCCG CGGAATTTGA TCAGTCGCTG CTGAATGATT TTGATATACT TTTTGAACTG GTTTCGTCTA TCCGTAACCT GCGTAATTCG AAAGGCATCA GTCCGAAAAC GGCATTGCCG CTCGCAATTC GTACCGATTC GAACGAGCGC TACAATGCAT TGACGCCGCT GATCGAAAAG CTGGCGAATG TAGAAGGCAT TAGTTATGTA TCGGGTGAAG CGGAAGGAAC CTCCTTCCGC GTGAAGTCGG ACGAGTTTTT CGTGAACCTG GCCGATGAGC TGGATGTGGA AGCGGAACGC GAAAACCTCC TCCGCGAATT GGAATACACG AAAGGCTTCC TGGATTCGGT GATGAAAAAA CTCTCGAATG AGCGTTTTGT AGCCAATGCA AAAGGCGATA TCGTCGAAAA GGAAAGGGCC AAGCAGGCCG ACGCCGAAGC GAAGATCGCG ACGTTGACCG AGGCATTAGC AAGATTAAAA TAA
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Protein sequence | MISKTYAPQE IEDKWYSYWI ENKFFQSKPN PDKEPYTIVI PPPNVTGVLH MGHMLNNTIQ DILIRKARME GKEACWVPGT DHASIATEAK VVAMLKERGI NKRDLTRDEF LEYCWEWTHK YGGIILKQLR KLGASCDWDR TRFTMEPDLY DSVIDVFIDL YNKGEIYRGH RMVNWDPQAR TTVSDEEVIM KEVNQKLVYL RYPLVGEDGE GRMEEGVTIA TTRPETIMAD VAICVNPADE RYQHLIGKKV LIPLINRAIP IIADDYVEME FGTGCLKVTP AHDTNDYELG KRHNLPIIDL LNEDGTLNDK AQILVGEERF VARKKIIKLL EESGNLVKVE EYRSNVGHSE RTDSVIEPRL SEQWFLRMEK ISKPAFDNVM NDTVQLIPAK FKNTYRHWME NVRDWNISRQ LWWGHRIPAY YLNDGTMIVA KSKREALRKA QHEYQLFALT EEDITQDPDV LDTWFSSWLW PISVFNGIKE PDNEEVNYYY PTNDLVTAPE ILFFWVARMI IAGYEYRGQY PFKNVYLTGI VRDKQGRKMS KSLGNSPDPI DLIEKYGADS IRTGMLFSSQ AGNDLPYDEK LIEQGRNFGN KIWNAFRLVK GWTVDSELPV PEGSKLAVQW FESKLNQTLA EVQDHFSKFR ISDALNSVYK LIWDDFCAQY LEMIKPGFEQ PIDLSTYDST LDFFDRQMRL LHPFMPFISE EIWQNIIERG EKESICIAHF PQAAEFDQSL LNDFDILFEL VSSIRNLRNS KGISPKTALP LAIRTDSNER YNALTPLIEK LANVEGISYV SGEAEGTSFR VKSDEFFVNL ADELDVEAER ENLLRELEYT KGFLDSVMKK LSNERFVANA KGDIVEKERA KQADAEAKIA TLTEALARLK
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